From 4c1dbe6110a1917301073850ea7b4599b518dbd7 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 28 Nov 2023 08:11:27 -0700 Subject: [PATCH 1/2] Update nextflow.config --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index fed8209c..50b328a1 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.10.20231121' + version = 'v3.10.20231128' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation' From f2d3c16c71c1301118a0e2723aa61d1f805bf009 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 28 Nov 2023 08:12:19 -0700 Subject: [PATCH 2/2] Update freyja to version 1.4.7-2023-11-28 --- modules/freyja.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/freyja.nf b/modules/freyja.nf index 7b516a96..9b5af670 100644 --- a/modules/freyja.nf +++ b/modules/freyja.nf @@ -3,7 +3,7 @@ process freyja_variants { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-11-21' + container 'quay.io/uphl/freyja:1.4.7-2023-11-28' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -44,7 +44,7 @@ process freyja_demix { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-11-21' + container 'quay.io/uphl/freyja:1.4.7-2023-11-28' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -85,7 +85,7 @@ process freyja_boot { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-11-21' + container 'quay.io/uphl/freyja:1.4.7-2023-11-28' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -124,7 +124,7 @@ process freyja_aggregate { tag "Aggregating results from freyja" label "process_single" publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-11-21' + container 'quay.io/uphl/freyja:1.4.7-2023-11-28' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}