From aba206afd7cf3d01c22956a0eb57376b41aac1f3 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 10 Dec 2024 10:37:10 -0700 Subject: [PATCH] added local --- .github/workflows/check_versions.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check_versions.yml b/.github/workflows/check_versions.yml index ae2e331..a5b6e93 100644 --- a/.github/workflows/check_versions.yml +++ b/.github/workflows/check_versions.yml @@ -20,7 +20,7 @@ jobs: - name: versions run: | issue_text="Needing updates: " - workflow_containers=($(grep container modules/* | grep staphb | sort | uniq | grep -v latest | awk '{print $3}' | sed 's/'\''//g')) + workflow_containers=($(grep container modules/local/* | grep staphb | sort | uniq | grep -v latest | awk '{print $3}' | sed 's/'\''//g')) for container in ${workflow_containers[@]} do base=$(echo $container | cut -f 1 -d ":") @@ -41,7 +41,7 @@ jobs: done latest_nextclade_version=$(docker run nextstrain/nextclade:latest nextclade --version | awk '{print $2}') - worfklow_nextclade_version=$(grep container modules/nextclade.nf | cut -f 2 -d ":" | cut -f 1 -d "'" | head -n 1) + worfklow_nextclade_version=$(grep container modules/local/nextclade.nf | cut -f 2 -d ":" | cut -f 1 -d "'" | head -n 1) if [[ "$latest_nextclade_version" == "$worfklow_nextclade_version" ]] then