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modules.json
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{
"name": "nf-core/cutandrun",
"homePage": "https://github.com/nf-core/cutandrun",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bedtools/bamtobed": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"]
},
"bedtools/complement": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bedtools/genomecov": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"]
},
"bedtools/intersect": {
"branch": "master",
"git_sha": "c1532c77717ad7c64752b26b0fd9b4556bdef272",
"installed_by": ["modules"]
},
"bedtools/merge": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "fe54581f8bed20e4c4a51c616c93fd3379d89820",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "6a24fbe314bb2e6fe6306c29a63076ea87e8eb3c",
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},
"cat/fastq": {
"branch": "master",
"git_sha": "5c460c5a4736974abde2843294f35307ee2b0e5e",
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},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"deeptools/computematrix": {
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},
"deeptools/multibamsummary": {
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"deeptools/plotcorrelation": {
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},
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},
"deeptools/plotpca": {
"branch": "master",
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"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "bd8092b67b5103bdd52e300f75889442275c3117",
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},
"gunzip": {
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},
"macs2/callpeak": {
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},
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},
"preseq/lcextrap": {
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},
"samtools/faidx": {
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},
"samtools/flagstat": {
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"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
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},
"samtools/index": {
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},
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},
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},
"samtools/view": {
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"seacr/callpeak": {
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},
"tabix/bgziptabix": {
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},
"ucsc/bedclip": {
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"ucsc/bedgraphtobigwig": {
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"untar": {
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}
}
},
"subworkflows": {
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"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
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"installed_by": ["bam_sort_stats_samtools"]
}
}
}
}
}
}