Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Implement and test code for filtering LOINC codes #24

Open
3 tasks
pnrobinson opened this issue Jun 27, 2022 · 3 comments
Open
3 tasks

Implement and test code for filtering LOINC codes #24

pnrobinson opened this issue Jun 27, 2022 · 3 comments

Comments

@pnrobinson
Copy link
Collaborator

  • write a filter that demands that we have at least 2 abnormal lab values in one patient in order to call the HPO term
  • write a filter that demands that we have at least 50% of results of a certain lab values are abnormal in one patient in order to call the HPO term
  • Repeat the logistic regression analysis with this dataset
@C-1337ka
Copy link

not currently in Python version

@iimpulse
Copy link
Member

Now that pre-processing will be done in loinchpo package via #19 . We want to implement a tranform filter for loinchpo based on these patient level loinc codes.

  • Acceptance criteria will be to analyze this filter either on synthetic data for n3c data.

@iimpulse
Copy link
Member

I've changed this to low priority as we are still working out what this will look like.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants