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Fine tuned model on 1KG dataset #4

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antoineszatkownik opened this issue Jul 5, 2024 · 0 comments
Open

Fine tuned model on 1KG dataset #4

antoineszatkownik opened this issue Jul 5, 2024 · 0 comments

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@antoineszatkownik
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Hello,

we fine-tune our DNAGPT on 5008 haplotypes from 1000 Genomes data [42] which can be seen as the real genomes sequences and we use DNAGPT to generate 5000 AGs of 10000 Single Nucleotide Polymorphisms (SNPs) region for further analysis (can be seen as 5000 sequences each with a length of 10,000 bps)

Would it be possible to release the model fine-tuned on 1KG dataset please, or the script to fine tune it on this data, or the 5000 AGs consisting of 10 000 SNPs ? As of now, only the regression and classification .pth are available.

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