adding a bioconductor base #67
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@emmjab, not sure how r-bioconductor gets created. |
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The idea from this was to use the bioconductor project as a base and add the renku dependencies on top, to share with the bioconductor community. I haven't looked at this in a while so i'll see if there were any bioconductor version updates and re-test. |
…f it does not exist
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The latest commits with the symlink & project opening for r projects (both the base and the bioconductor) "work", but also add in the project contents into the parent directory... need to fix this. |
rokroskar
reviewed
Feb 11, 2020
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| # install the jupyter stack | ||
| ARG JUPYTERHUB_VERSION=0.9.6 | ||
| #RUN conda install --quiet --yes \ |
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can we remove the commented pieces if they are not providing documentation?
rokroskar
reviewed
Feb 11, 2020
| rm -rf /home/$NB_USER/.cache/yarn && \ | ||
| pip install -U --no-cache-dir pip wheel | ||
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| #RUN pip install --no-cache-dir jupyter-rsession-proxy |
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same here - remove commented pieces
rokroskar
requested changes
Feb 11, 2020
rokroskar
approved these changes
Feb 12, 2020
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an alternative to starting with the
rockerdocker image for R.test from image built here: https://hub.docker.com/r/emmjab/r-bioconductor/tags
and project here: https://renkulab.io/projects/emma.jablonski/rbasic/files