v1.2.0

Update bulk and bulk2single code reference

bulk module:

• Fix the cutoff parameter non-vaild on bulk.geneset_enrichment
• Add pyPPI,pyGSEA,pyWGCNA,pyTCGA,pyDEG module.

bulk2single module:

• Add the bulk2single.save to save model by manual

v1.1.10

Update all code reference

• Fix the parameter non-vaild on single.mofa.mofa_run function
• Add the layer raw count addition on single.scanpy_lazy function
• Add utils.plot_boxplot to plot the box plot with jittered points.
• Add bulk.pyDEseq.plot_boxplot to plot the box plot with jittered points of specific Genes.

v1.1.9

bulk2single module:

• Add the bulk2single module
• Fix the model load error from bulk2space
• Fix the early stop from bulk2space
• Add more friendly input method and visualisation
• Add the loss history visualisation

utils module:

• Add the pyomic_palette in plot module

v1.1.8

single module:

• Fix the cpdb's error included import error and color error of cpdb_plot_network
• Add the cpdb's method included cpdb_submeans_exacted that researchers can exact the sub network easily.

v1.1.7

v1.1.7

bulk module:

• Add the Deseq2 included pyDEseq, deseq2_normalize, estimateSizeFactors, estimateDispersions, Matrix_ID_mapping
• Add the tcga included TCGA
• Add the Enrichment included geneset_enrichment, geneset_plot

single module:

• Add the scdrug included autoResolution, writeGEP, Drug_Response
• Add the cpdb included cpdb_network_cal, cpdb_plot_network, cpdb_plot_interaction, cpdb_interaction_filtered
• Add the scgsea included geneset_aucell, pathway_aucell, pathway_aucell_enrichment, pathway_enrichment, pathway_enrichment_plot