From 696f0caf2a19cec1ecb87147dbb1fd4b7d022c3d Mon Sep 17 00:00:00 2001 From: Rob J Goedman Date: Sat, 27 Apr 2024 11:42:25 -0400 Subject: [PATCH] Rel 4.5.1 --- .github/workflows/CI.yml | 18 +++++++++--------- Project.toml | 2 +- README.md | 2 +- src/stanmodel/DiagnoseModel.jl | 2 +- 4 files changed, 12 insertions(+), 12 deletions(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index b816040..c7c7ac8 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -7,7 +7,7 @@ on: pull_request: env: - CMDSTAN: "/home/worker/cmdstan-2.33.0/" + CMDSTAN: "/home/worker/cmdstan-2.34.1/" jobs: test: @@ -41,17 +41,17 @@ jobs: OLDWD=`pwd` cd ~ pwd - wget https://github.com/stan-dev/cmdstan/releases/download/v2.33.0/cmdstan-2.33.0.tar.gz - tar -xzpf cmdstan-2.33.0.tar.gz + wget https://github.com/stan-dev/cmdstan/releases/download/v2.34.1/cmdstan-2.34.1.tar.gz + tar -xzpf cmdstan-2.34.1.tar.gz ls -lia . - ls -lia ./cmdstan-2.33.0 - ls -lia ./cmdstan-2.33.0/make - touch ./cmdstan-2.33.0/make/local - echo "STAN_THREADS=true" > ./cmdstan-2.33.0/make/local + ls -lia ./cmdstan-2.34.1 + ls -lia ./cmdstan-2.34.1/make + touch ./cmdstan-2.34.1/make/local + echo "STAN_THREADS=true" > ./cmdstan-2.34.1/make/local make -C $CMDSTAN build cd $OLDWD env: - CMDSTAN: "/home/runner/cmdstan-2.33.0/" + CMDSTAN: "/home/runner/cmdstan-2.34.1/" - uses: actions/checkout@v2 - uses: julia-actions/setup-julia@v1 with: @@ -70,7 +70,7 @@ jobs: - uses: julia-actions/julia-buildpkg@latest - uses: julia-actions/julia-runtest@latest env: - CMDSTAN: "/home/runner/cmdstan-2.33.0/" + CMDSTAN: "/home/runner/cmdstan-2.34.1/" - uses: julia-actions/julia-processcoverage@v1 if: matrix.version == '1' && matrix.os == 'ubuntu-latest' && matrix.num_threads == 1 - uses: codecov/codecov-action@v1 diff --git a/Project.toml b/Project.toml index f97ccc4..00ed306 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "StanDiagnose" uuid = "fb13fc95-9a72-5e81-90ef-432a29d7f4c2" authors = ["Rob J Goedman "] -version = "4.5.0" +version = "4.5.1" [deps] CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" diff --git a/README.md b/README.md index 3063718..34e1dcd 100644 --- a/README.md +++ b/README.md @@ -31,7 +31,7 @@ pkg> add StanDiagnose.jl You need a working [Stan's cmdstan](https://mc-stan.org/users/interfaces/cmdstan.html) installation, the path of which you should specify either in `CMDSTAN` or `JULIA_CMDSTAN_HOME`, eg in your `~/.julia/config/startup.jl` have a line like ```julia # CmdStan setup -ENV["JULIA_CMDSTAN_HOME"] = expanduser("~/src/cmdstan-2.19.1/") # replace with your path +ENV["JULIA_CMDSTAN_HOME"] = expanduser("~/src/cmdstan-2.34.1/") # replace with your path ``` This package is derived from Tamas Papp's [StanRun.jl]() package. diff --git a/src/stanmodel/DiagnoseModel.jl b/src/stanmodel/DiagnoseModel.jl index de6fda9..8e682e1 100644 --- a/src/stanmodel/DiagnoseModel.jl +++ b/src/stanmodel/DiagnoseModel.jl @@ -50,7 +50,7 @@ Create a DiagnoseModel and compile the Stan Language Model.. function DiagnoseModel( name::AbstractString, model::AbstractString, - tmpdir = CMDSTAN_HOME) + tmpdir = mktempdir()) !isdir(tmpdir) && mkdir(tmpdir)