diff --git a/Examples_Notebooks/BridgeStan.jl b/Examples_Notebooks/BridgeStan.jl deleted file mode 100644 index c58a4bb8..00000000 --- a/Examples_Notebooks/BridgeStan.jl +++ /dev/null @@ -1,1823 +0,0 @@ -### A Pluto.jl notebook ### -# v0.19.16 - -using Markdown -using InteractiveUtils - -# ╔═╡ 5084b8f0-65ac-4704-b1fc-2a9008132bd7 -using Pkg - -# ╔═╡ 550371ad-d411-4e66-9d63-7329322c6ea1 -begin - # Specific to ROSStanPluto - using StanSample - - # Graphics related - using GLMakie - - # Include basic packages - using RegressionAndOtherStories -end - -# ╔═╡ fa1ee718-a00b-4969-860b-798409045a51 -md" ##### Experimental use of BridgeStan." - -# ╔═╡ cf39df58-3371-4535-88e4-f3f6c0404500 -md" ##### Widen the cells." - -# ╔═╡ 0616ece8-ccf8-4281-bfed-9c1192edf88e -html""" - -""" - -# ╔═╡ 4755dab0-d228-41d3-934a-56f2863a5652 -md"###### A typical set of Julia packages to include in notebooks." - -# ╔═╡ 5fdc1b11-ce9b-4f67-8e2e-5ab22cd75b70 -md" -!!! note - -All data files are available (as .csv files) in the data subdirectory of package RegressionAndOtherStories.jl. -" - -# ╔═╡ 100e2ea9-17e5-4eef-b880-823311f5d496 -ros_datadir() - -# ╔═╡ d830f41c-0fb6-4bff-9fe0-0bd51f444779 -hibbs = CSV.read(ros_datadir("ElectionsEconomy", "hibbs.csv"), DataFrame) - -# ╔═╡ bdc2ae99-233f-4bf7-9426-906029fd71f0 -tmpdir = mktempdir() - -# ╔═╡ 5727d281-2c11-4b65-b492-58a7afcac0ac -md" ##### Quick test if smb (Stan Model Bridge-to-stan) is ok." - -# ╔═╡ 4f2e4d69-35c7-4693-ae12-503f37b771f1 -bernoulli_model = " -data { - int N; - int y[N]; -} -parameters { - real theta; -} -model { - theta ~ beta(1,1); - y ~ bernoulli(theta); -} -"; - -# ╔═╡ 060268ec-c4bc-4d97-874d-37f1b192e399 -begin - data = Dict("N" => 10, "y" => [0, 1, 0, 1, 0, 0, 0, 0, 0, 1]) - sm = SampleModel("bernoulli", bernoulli_model) - rc = stan_sample(sm; data) - success(rc) && read_summary(sm) -end - -# ╔═╡ f1f43a67-d5e1-48c6-8b69-893f4d2e9c1e -smb = create_smb(sm, joinpath(sm.tmpdir, sm.name * "_data_4.json")); - -# ╔═╡ 0a2c175e-1d75-4c3e-89b7-88a5caa1bf07 -typeof(smb) - -# ╔═╡ 1c1b1cfd-dc7b-40f5-8a63-aa332d42d2f8 -let - x = rand(BridgeStan.param_unc_num(smb)) - q = @. log(x / (1 - x)) # unconstrained scale - lp, grad = BridgeStan.log_density_gradient(smb, q, jacobian = 0) - DataFrame(x=x, q=q, log_density=lp, gradient=grad) -end - -# ╔═╡ 478e931b-3be1-44b1-ac4d-e470c574874f -let - x = 0.33 - q = @. log(x / (1 - x)) # unconstrained scale - lp, grad = BridgeStan.log_density_gradient(smb, [q], jacobian = 0) - DataFrame(x=x, q=q, log_density=lp, gradient=grad) -end - -# ╔═╡ feda7416-1195-489f-991d-8a876507db45 -function sim(smb::BridgeStan.StanModel, x=LinRange(0.1, 0.9, 100)) - q = zeros(length(x)) - ld = zeros(length(x)) - g = Vector{Vector{Float64}}(undef, length(x)) - for (i, p) in enumerate(x) - q[i] = @. log(p / (1 - p)) # unconstrained scale - ld[i], g[i] = BridgeStan.log_density_gradient(smb, q[i:i], jacobian = 0) - end - return DataFrame(x=x, q=q, log_density=ld, gradient=[x[1] for x in g]) -end - -# ╔═╡ 2775bef8-9f19-48fa-a92f-536060e59aad -@time sim_df = sim(smb) - -# ╔═╡ a6f798cf-8ec1-4b3a-bebc-77c5371530be -let - fm = findmax(sim_df.log_density) - x = sim_df.x[fm[2]] - - f = Figure() - ax = Axis(f[1, 1]; title="BridgeStan example") - dens = lines!(sim_df.x, sim_df.log_density) - scatter!(x, fm[1]) - lines!([x, x], [fm[1], minimum(sim_df.log_density)]; color=:grey, linestyle=:dash) - annotations!("$([round(x; digits=2), round(fm[1]; digits=2)])"; position=(0.31, -6)) - gra = lines!(sim_df.x, sim_df.gradient) - Legend(f[1, 2], [dens, gra], ["log_density", "gradient"]) - f -end - -# ╔═╡ e936c5c3-f5c7-423d-846b-529f77499b34 -sim_df[findmax(sim_df.log_density)[2], :] - -# ╔═╡ 9fb10ce6-9ea3-4857-bc4d-5b139d27eb06 -md" ##### Try a simple model." - -# ╔═╡ 1f512a86-6a42-4f3c-bb50-ebb53791c1b9 -stan1_2 = " -data { - int N; - vector[N] x; - vector[N] y; -} -parameters { - real a; // Coefficient independent variable - real sigma; // dispersion parameter -} -model { - vector[N] mu; - mu = a * x; - // priors including constants - a ~ normal(0, 1); - sigma ~ normal(0, 1); - y ~ normal(mu, sigma); -}"; - -# ╔═╡ bdd4422c-0eea-4f08-b9ae-efc396c0bce4 -let - N = 100 - x = rand(Normal(2, 1), N) - y = 2 * x + rand(Normal(0, 1), N) - data = (N = 100, x = x, y = y) - global m1_2s = SampleModel("m1_2s", stan1_2) - global rc1_2s = stan_sample(m1_2s; data) - if success(rc1_2s) - global sum1_2s = read_summary(m1_2s) - end -end - -# ╔═╡ 44eccff8-f882-45aa-879e-3b245770196e -let - global smb1_2s = create_smb(m1_2s, joinpath(m1_2s.tmpdir, m1_2s.name * "_data_4.json")) - q = [2.0, 0.0] # unconstrained scale - lp, grad = BridgeStan.log_density_gradient(smb1_2s, q, jacobian = 0) - DataFrame(q=q, log_density=lp, gradient=grad) -end - -# ╔═╡ c6792359-c10a-4c1a-a764-c12b85cf24e8 -BridgeStan.param_names(smb1_2s) - -# ╔═╡ 3539edb8-bb39-402a-8641-cadcedae905a -md" ##### Return to m1_1s." - -# ╔═╡ 274dc84c-b416-4f9e-8ff2-6ca0f08a40cf -stan1_1 = " -data { - int N; // total number of observations - vector[N] growth; // Independent variable: growth - vector[N] vote; // Dependent variable: votes -} -parameters { - real b; // Coefficient independent variable - real a; // Intercept - real sigma; // Dispersion parameter -} -model { - vector[N] mu; - mu = a + b * growth; - - // priors including constants - a ~ normal(50, 20); - b ~ normal(2, 10); - sigma ~ exponential(1); - - // likelihood including constants - vote ~ normal(mu, sigma); -}"; - -# ╔═╡ 953eea61-f05f-4233-86aa-d5af3b47b41e -let - data = (N=16, vote=hibbs.vote, growth=hibbs.growth) - global m1_1s = SampleModel("m1_1s", stan1_1, tmpdir) - global rc1_1s = stan_sample(m1_1s; data) - success(rc1_1s) && describe(m1_1s, [:a, :b, :sigma]) -end - -# ╔═╡ 9d1a8b9a-2b0c-4b8d-af31-1717e7a5ecd7 -if success(rc1_1s) - post1_1s = read_samples(m1_1s, :dataframe) - ms1_1s = model_summary(post1_1s, [:a, :b, :sigma]) -end - -# ╔═╡ b222454b-6f4d-4d91-8374-a264873870bf -success(rc1_1s) && describe(m1_1s, [:a, :b, :sigma]) - -# ╔═╡ 7e6a43cb-8789-422c-80d2-6a154b576c56 -if success(rc1_1s) - sum1_1s = read_summary(m1_1s) -end - -# ╔═╡ 1503a0c8-20ff-4821-8dc8-7299617628ef -sum1_1s[9, :mean] - -# ╔═╡ e5129e29-9281-4796-88b6-020d9e8d580c -begin - smb1_1s = create_smb(m1_1s, joinpath(m1_1s.tmpdir, m1_1s.name * "_data_4.json")) - q = rand(BridgeStan.param_unc_num(smb1_1s)) # unconstrained scale - lp, grad = BridgeStan.log_density_gradient(smb1_1s, q, jacobian = 0) - DataFrame(q=q, log_density=lp, gradient=grad) -end - -# ╔═╡ 0c17b7d0-cb6e-4ccc-8685-1fa962aebebf -let - qmax = [sum1_1s[8, :mean], sum1_1s[9, :mean], 1.03] # unconstrained scale - lp, grad = BridgeStan.log_density_gradient(smb1_1s, qmax, jacobian = 0) - DataFrame(q=qmax, log_density=lp, gradient=grad) -end - -# ╔═╡ 9c82419f-3577-46a4-b759-2badbcd1411f -mean(rand(Exponential(1), 1000)) - -# ╔═╡ 450c557d-5e11-4061-b807-fffb429212f7 -BridgeStan.param_unc_num(smb1_1s) - -# ╔═╡ 7a709a1a-e8b1-4c3f-abcb-e3facd87fee9 -BridgeStan.param_names(smb1_1s) - -# ╔═╡ 4b433a67-2a29-41c2-a04a-83572eb09dd2 -let - smb1_1s = create_smb(m1_1s, joinpath(m1_1s.tmpdir, m1_1s.name * "_data_4.json")) - q = [3.04, 43.32, 1.0] # unconstrained scale - lp, grad = BridgeStan.log_density_gradient(smb1_1s, q, jacobian = 0) - DataFrame(q=q, log_density=lp, gradient=grad) -end - -# ╔═╡ 79aa12f4-abef-479a-8644-25a9f5588f22 -function sim2(smb1_1s::BridgeStan.StanModel, x=LinRange(1, 6, 100)) - q = Vector{Vector{Float64}}(undef, length(x)) - ld = zeros(length(x)) - g = Vector{Vector{Float64}}(undef, length(x)) - for (i, p) in enumerate(x) - q[i] = [x[i], 43.32, 1.0] # unconstrained scale - ld[i], g[i] = BridgeStan.log_density_gradient(smb1_1s, q[i], - jacobian = 0) - end - return DataFrame(x=x, q=q, log_density=ld, gradient=[x[1] for x in g]) -end - -# ╔═╡ 3648ec90-7fda-4047-b0dc-0c448f795431 -@time sim_df_2 = sim2(smb1_1s) - -# ╔═╡ 52c42c16-03f7-4416-9180-835b7ed9d942 -sim_df_2[findmax(sim_df_2.log_density)[2], :] - -# ╔═╡ dca12cf4-6d3c-4899-8b70-c7d974705064 -sim_df_2[59:70, :] - -# ╔═╡ 00000000-0000-0000-0000-000000000001 -PLUTO_PROJECT_TOML_CONTENTS = """ -[deps] -GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a" -Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -RegressionAndOtherStories = "21324389-b050-441a-ba7b-9a837781bda0" -StanSample = "c1514b29-d3a0-5178-b312-660c88baa699" - -[compat] -GLMakie = "~0.8.0" -RegressionAndOtherStories = "~0.7.4" -StanSample = "~6.13.7" -""" - -# ╔═╡ 00000000-0000-0000-0000-000000000002 -PLUTO_MANIFEST_TOML_CONTENTS = """ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.10.0-DEV" -manifest_format = "2.0" -project_hash = "3d3282b40b06ab32f85d32b197fbda8430a0fda1" - -[[deps.ANSIColoredPrinters]] -git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" -uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" -version = "0.0.1" - -[[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" - -[[deps.AbstractTrees]] -git-tree-sha1 = "52b3b436f8f73133d7bc3a6c71ee7ed6ab2ab754" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.3" - -[[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "195c5505521008abea5aee4f96930717958eac6f" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.4.0" - -[[deps.Animations]] -deps = ["Colors"] -git-tree-sha1 = "e81c509d2c8e49592413bfb0bb3b08150056c79d" -uuid = "27a7e980-b3e6-11e9-2bcd-0b925532e340" -version = "0.4.1" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Automa]] -deps = ["Printf", "ScanByte", "TranscodingStreams"] -git-tree-sha1 = "d50976f217489ce799e366d9561d56a98a30d7fe" -uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b" -version = "0.8.2" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "1dd4d9f5beebac0c03446918741b1a03dc5e5788" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.6" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] -git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.7" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "5084cc1a28976dd1642c9f337b28a3cb03e0f7d2" -uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.7" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e7ff6cadf743c098e08fca25c91103ee4303c9bb" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.15.6" - -[[deps.ChangesOfVariables]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "38f7a08f19d8810338d4f5085211c7dfa5d5bdd8" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.4" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.0" - -[[deps.ColorBrewer]] -deps = ["Colors", "JSON", "Test"] -git-tree-sha1 = "61c5334f33d91e570e1d0c3eb5465835242582c4" -uuid = "a2cac450-b92f-5266-8821-25eda20663c8" -version = "0.4.0" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random", "SnoopPrecompile"] -git-tree-sha1 = "aa3edc8f8dea6cbfa176ee12f7c2fc82f0608ed3" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.20.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"] -git-tree-sha1 = "d08c20eef1f2cbc6e60fd3612ac4340b89fea322" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.9.9" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "417b0ed7b8b838aa6ca0a87aadf1bb9eb111ce40" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.8" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" - -[[deps.CompatHelperLocal]] -deps = ["DocStringExtensions", "Pkg", "UUIDs"] -git-tree-sha1 = "be25ab802a22a212ce4da944fe60d7c250ddcfe1" -uuid = "5224ae11-6099-4aaa-941d-3aab004bd678" -version = "0.1.25" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.1+0" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.13.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "19b1417ff479c07e523fcbf2fd735a3fde3d1ab3" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.0" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "a7756d098cbabec6b3ac44f369f74915e8cfd70a" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.79" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "c36550cb29cbe373e95b3f40486b9a4148f89ffd" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.2" - -[[deps.Documenter]] -deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "6030186b00a38e9d0434518627426570aac2ef95" -uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.27.23" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.EarCut_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053" -uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" -version = "2.2.4+0" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" - -[[deps.Extents]] -git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99" -uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.1" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileIO]] -deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "7be5f99f7d15578798f338f5433b6c432ea8037b" -uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.0" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.20" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "802bfc139833d2ba893dd9e62ba1767c88d708ae" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.5" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.FreeType]] -deps = ["CEnum", "FreeType2_jll"] -git-tree-sha1 = "cabd77ab6a6fdff49bfd24af2ebe76e6e018a2b4" -uuid = "b38be410-82b0-50bf-ab77-7b57e271db43" -version = "4.0.0" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.10.4+0" - -[[deps.FreeTypeAbstraction]] -deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] -git-tree-sha1 = "38a92e40157100e796690421e34a11c107205c86" -uuid = "663a7486-cb36-511b-a19d-713bb74d65c9" -version = "0.10.0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW]] -deps = ["GLFW_jll"] -git-tree-sha1 = "35dbc482f0967d8dceaa7ce007d16f9064072166" -uuid = "f7f18e0c-5ee9-5ccd-a5bf-e8befd85ed98" -version = "3.4.1" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GLM]] -deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "884477b9886a52a84378275737e2823a5c98e349" -uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.1" - -[[deps.GLMakie]] -deps = ["ColorTypes", "Colors", "FileIO", "FixedPointNumbers", "FreeTypeAbstraction", "GLFW", "GeometryBasics", "LinearAlgebra", "Makie", "Markdown", "MeshIO", "ModernGL", "Observables", "Printf", "Serialization", "ShaderAbstractions", "SnoopPrecompile", "StaticArrays"] -git-tree-sha1 = "69508b8c0068b8d5f3f3085a998cb64993b90089" -uuid = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a" -version = "0.8.0" - -[[deps.GeoInterface]] -deps = ["Extents"] -git-tree-sha1 = "fb28b5dc239d0174d7297310ef7b84a11804dfab" -uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.0.1" - -[[deps.GeometryBasics]] -deps = ["EarCut_jll", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "fe9aea4ed3ec6afdfbeb5a4f39a2208909b162a6" -uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.5" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "fb83fbe02fe57f2c068013aa94bcdf6760d3a7a7" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.74.0+1" - -[[deps.Graphics]] -deps = ["Colors", "LinearAlgebra", "NaNMath"] -git-tree-sha1 = "d61890399bc535850c4bf08e4e0d3a7ad0f21cbd" -uuid = "a2bd30eb-e257-5431-a919-1863eab51364" -version = "1.1.2" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.GridLayoutBase]] -deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "678d136003ed5bceaab05cf64519e3f956ffa4ba" -uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.9.1" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"] -git-tree-sha1 = "709d864e3ed6e3545230601f94e11ebc65994641" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.11" - -[[deps.IOCapture]] -deps = ["Logging", "Random"] -git-tree-sha1 = "f7be53659ab06ddc986428d3a9dcc95f6fa6705a" -uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" -version = "0.2.2" - -[[deps.ImageAxes]] -deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] -git-tree-sha1 = "c54b581a83008dc7f292e205f4c409ab5caa0f04" -uuid = "2803e5a7-5153-5ecf-9a86-9b4c37f5f5ac" -version = "0.6.10" - -[[deps.ImageBase]] -deps = ["ImageCore", "Reexport"] -git-tree-sha1 = "b51bb8cae22c66d0f6357e3bcb6363145ef20835" -uuid = "c817782e-172a-44cc-b673-b171935fbb9e" -version = "0.1.5" - -[[deps.ImageCore]] -deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Graphics", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "Reexport"] -git-tree-sha1 = "acf614720ef026d38400b3817614c45882d75500" -uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" -version = "0.9.4" - -[[deps.ImageIO]] -deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"] -git-tree-sha1 = "342f789fd041a55166764c351da1710db97ce0e0" -uuid = "82e4d734-157c-48bb-816b-45c225c6df19" -version = "0.6.6" - -[[deps.ImageMetadata]] -deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"] -git-tree-sha1 = "36cbaebed194b292590cba2593da27b34763804a" -uuid = "bc367c6b-8a6b-528e-b4bd-a4b897500b49" -version = "0.9.8" - -[[deps.Imath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "87f7662e03a649cffa2e05bf19c303e168732d3e" -uuid = "905a6f67-0a94-5f89-b386-d35d92009cd1" -version = "3.1.2+0" - -[[deps.IndirectArrays]] -git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" -uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" -version = "1.0.0" - -[[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" -uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "0cf92ec945125946352f3d46c96976ab972bde6f" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.3.2" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "d979e54b71da82f3a65b62553da4fc3d18c9004c" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2018.0.3+2" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "842dd89a6cb75e02e85fdd75c760cdc43f5d6863" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.6" - -[[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] -git-tree-sha1 = "16c0cc91853084cb5f58a78bd209513900206ce6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.4" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "49510dfcb407e572524ba94aeae2fced1f3feb0f" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.8" - -[[deps.InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" - -[[deps.Isoband]] -deps = ["isoband_jll"] -git-tree-sha1 = "f9b6d97355599074dc867318950adaa6f9946137" -uuid = "f1662d9f-8043-43de-a69a-05efc1cc6ff4" -version = "0.1.1" - -[[deps.IterTools]] -git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.4.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.3" - -[[deps.JpegTurbo]] -deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] -git-tree-sha1 = "a77b273f1ddec645d1b7c4fd5fb98c8f90ad10a5" -uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0" -version = "0.1.1" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "9816b296736292a80b9a3200eb7fbb57aaa3917a" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.5" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LazyModules]] -git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" -uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" -version = "0.3.1" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+1" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "946607f84feb96220f480e0422d3484c49c00239" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.19" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.10" - -[[deps.Makie]] -deps = ["Animations", "Base64", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Distributions", "DocStringExtensions", "FFMPEG", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MakieCore", "Markdown", "Match", "MathTeXEngine", "MiniQhull", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "Printf", "Random", "RelocatableFolders", "Serialization", "Setfield", "Showoff", "SignedDistanceFields", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "7154536d78dcde1c4321b50e0e8dda90995f1f6f" -uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.19.0" - -[[deps.MakieCore]] -deps = ["Observables"] -git-tree-sha1 = "5357b0696f7c245941389995e193c127190d45f8" -uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.6.0" - -[[deps.MappedArrays]] -git-tree-sha1 = "e8b359ef06ec72e8c030463fe02efe5527ee5142" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.1" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.Match]] -git-tree-sha1 = "1d9bc5c1a6e7ee24effb93f175c9342f9154d97f" -uuid = "7eb4fadd-790c-5f42-8a69-bfa0b872bfbf" -version = "1.2.0" - -[[deps.MathTeXEngine]] -deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "Test", "UnicodeFun"] -git-tree-sha1 = "f04120d9adf4f49be242db0b905bea0be32198d1" -uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" -version = "0.5.4" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.0+0" - -[[deps.MeshIO]] -deps = ["ColorTypes", "FileIO", "GeometryBasics", "Printf"] -git-tree-sha1 = "8be09d84a2d597c7c0c34d7d604c039c9763e48c" -uuid = "7269a6da-0436-5bbc-96c2-40638cbb6118" -version = "0.4.10" - -[[deps.MiniQhull]] -deps = ["QhullMiniWrapper_jll"] -git-tree-sha1 = "9dc837d180ee49eeb7c8b77bb1c860452634b0d1" -uuid = "978d7f02-9e05-4691-894f-ae31a51d76ca" -version = "0.4.0" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.0.2" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.ModernGL]] -deps = ["Libdl"] -git-tree-sha1 = "cb7f10a4e69af6d022747ff181e3976f3de34408" -uuid = "66fc600b-dfda-50eb-8b99-91cfa97b1301" -version = "1.1.6" - -[[deps.MosaicViews]] -deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] -git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe" -uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389" -version = "0.3.4" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" - -[[deps.NamedTupleTools]] -git-tree-sha1 = "17eeb975b00de066fb343aa8d56884f51d4a651c" -uuid = "d9ec5142-1e00-5aa0-9d6a-321866360f50" -version = "0.14.1" - -[[deps.Netpbm]] -deps = ["FileIO", "ImageCore", "ImageMetadata"] -git-tree-sha1 = "5ae7ca23e13855b3aba94550f26146c01d259267" -uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" -version = "1.1.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+0" - -[[deps.OpenEXR]] -deps = ["Colors", "FileIO", "OpenEXR_jll"] -git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633" -uuid = "52e1d378-f018-4a11-a4be-720524705ac7" -version = "0.3.2" - -[[deps.OpenEXR_jll]] -deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "923319661e9a22712f24596ce81c54fc0366f304" -uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" -version = "3.1.1+0" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.4.1" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" - -[[deps.PNGFiles]] -deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] -git-tree-sha1 = "f809158b27eba0c18c269cf2a2be6ed751d3e81d" -uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" -version = "0.3.17" - -[[deps.Packing]] -deps = ["GeometryBasics"] -git-tree-sha1 = "1155f6f937fa2b94104162f01fa400e192e4272f" -uuid = "19eb6ba3-879d-56ad-ad62-d5c202156566" -version = "0.4.2" - -[[deps.PaddedViews]] -deps = ["OffsetArrays"] -git-tree-sha1 = "03a7a85b76381a3d04c7a1656039197e70eda03d" -uuid = "5432bcbf-9aad-5242-b902-cca2824c8663" -version = "0.5.11" - -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" - -[[deps.Parsers]] -deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "b64719e8b4504983c7fca6cc9db3ebc8acc2a4d6" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.1" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.40.1+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.8.0" - -[[deps.PkgVersion]] -deps = ["Pkg"] -git-tree-sha1 = "f6cf8e7944e50901594838951729a1861e668cb8" -uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" -version = "0.3.2" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "SnoopPrecompile", "Statistics"] -git-tree-sha1 = "5b7690dd212e026bbab1860016a6601cb077ab66" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.2" - -[[deps.PolygonOps]] -git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" -uuid = "647866c9-e3ac-4575-94e7-e3d426903924" -version = "0.1.2" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.2" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.3.0" - -[[deps.PrettyTables]] -deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.7.2" - -[[deps.QOI]] -deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] -git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce" -uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65" -version = "1.0.0" - -[[deps.QhullMiniWrapper_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Qhull_jll"] -git-tree-sha1 = "607cf73c03f8a9f83b36db0b86a3a9c14179621f" -uuid = "460c41e3-6112-5d7f-b78c-b6823adb3f2d" -version = "1.0.0+1" - -[[deps.Qhull_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "238dd7e2cc577281976b9681702174850f8d4cbc" -uuid = "784f63db-0788-585a-bace-daefebcd302b" -version = "8.0.1001+0" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "97aa253e65b784fd13e83774cadc95b38011d734" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.6.0" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "dc84268fe0e3335a62e315a3a7cf2afa7178a734" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.3" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RegressionAndOtherStories]] -deps = ["CSV", "CategoricalArrays", "DataFrames", "DataStructures", "Dates", "DelimitedFiles", "Distributions", "DocStringExtensions", "GLM", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "NamedArrays", "NamedTupleTools", "Parameters", "Random", "Reexport", "Requires", "Statistics", "StatsBase", "StatsFuns", "Unicode"] -git-tree-sha1 = "c51d40e4a3d277fdb711756ae0e1bfee803f2b31" -uuid = "21324389-b050-441a-ba7b-9a837781bda0" -version = "0.7.4" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "bf3188feca147ce108c76ad82c2792c57abe7b1f" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.0" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.3.0+0" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SIMD]] -git-tree-sha1 = "bc12e315740f3a36a6db85fa2c0212a848bd239e" -uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.4.2" - -[[deps.ScanByte]] -deps = ["Libdl", "SIMD"] -git-tree-sha1 = "2436b15f376005e8790e318329560dcc67188e84" -uuid = "7b38b023-a4d7-4c5e-8d43-3f3097f304eb" -version = "0.3.3" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "efd23b378ea5f2db53a55ae53d3133de4e080aa9" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.16" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.ShaderAbstractions]] -deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "6b5bba824b515ec026064d1e7f5d61432e954b71" -uuid = "65257c39-d410-5151-9873-9b3e5be5013e" -version = "0.2.9" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.ShiftedArrays]] -git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" -uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" -version = "2.0.0" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SignedDistanceFields]] -deps = ["Random", "Statistics", "Test"] -git-tree-sha1 = "d263a08ec505853a5ff1c1ebde2070419e3f28e9" -uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96" -version = "0.4.0" - -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - -[[deps.Sixel]] -deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] -git-tree-sha1 = "8fb59825be681d451c246a795117f317ecbcaa28" -uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" -version = "0.1.2" - -[[deps.SnoopPrecompile]] -git-tree-sha1 = "f604441450a3c0569830946e5b33b78c928e1a85" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.1" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.0" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" - -[[deps.StackViews]] -deps = ["OffsetArrays"] -git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" -uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" -version = "0.1.1" - -[[deps.StanBase]] -deps = ["CSV", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "Documenter", "JSON", "NamedTupleTools", "Parameters", "Random", "Unicode"] -git-tree-sha1 = "9c1be7357e148627c5c2c0afaf2ba287fc81b48b" -uuid = "d0ee94f6-a23d-54aa-bbe9-7f572d6da7f5" -version = "4.7.4" - -[[deps.StanSample]] -deps = ["CSV", "CompatHelperLocal", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "JSON", "NamedTupleTools", "OrderedCollections", "Parameters", "Random", "Reexport", "Requires", "Serialization", "StanBase", "TableOperations", "Tables", "Unicode"] -git-tree-sha1 = "7b8c4ab8bb993296e93a64d1a4a09b9f79b8ffb5" -uuid = "c1514b29-d3a0-5178-b312-660c88baa699" -version = "6.13.7" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "ffc098086f35909741f71ce21d03dadf0d2bfa76" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.11" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f9af7f195fb13589dd2e2d57fdb401717d2eb1f6" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.5.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" - -[[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" - -[[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" -uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.33" - -[[deps.StringManipulation]] -git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.0" - -[[deps.StructArrays]] -deps = ["Adapt", "DataAPI", "StaticArraysCore", "Tables"] -git-tree-sha1 = "13237798b407150a6d2e2bce5d793d7d9576e99e" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.13" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+0" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TiffImages]] -deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] -git-tree-sha1 = "f8cd5b95aae14d3d88da725414bdde342457366f" -uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.6.2" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "e4bdc63f5c6d62e80eb1c0043fcc0360d5950ff7" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.10" - -[[deps.TriplotBase]] -git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" -uuid = "981d1d27-644d-49a2-9326-4793e63143c3" -version = "0.1.0" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "58443b63fb7e465a8a7210828c91c08b92132dff" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.14+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.6.9+4" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.isoband_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c" -uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4" -version = "0.2.3+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.2.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libsixel_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] -git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c" -uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" -version = "1.10.3+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" -""" - -# ╔═╡ Cell order: -# ╟─fa1ee718-a00b-4969-860b-798409045a51 -# ╟─cf39df58-3371-4535-88e4-f3f6c0404500 -# ╠═0616ece8-ccf8-4281-bfed-9c1192edf88e -# ╟─4755dab0-d228-41d3-934a-56f2863a5652 -# ╠═5084b8f0-65ac-4704-b1fc-2a9008132bd7 -# ╠═550371ad-d411-4e66-9d63-7329322c6ea1 -# ╟─5fdc1b11-ce9b-4f67-8e2e-5ab22cd75b70 -# ╠═100e2ea9-17e5-4eef-b880-823311f5d496 -# ╠═d830f41c-0fb6-4bff-9fe0-0bd51f444779 -# ╠═bdc2ae99-233f-4bf7-9426-906029fd71f0 -# ╟─5727d281-2c11-4b65-b492-58a7afcac0ac -# ╠═4f2e4d69-35c7-4693-ae12-503f37b771f1 -# ╠═060268ec-c4bc-4d97-874d-37f1b192e399 -# ╠═f1f43a67-d5e1-48c6-8b69-893f4d2e9c1e -# ╠═0a2c175e-1d75-4c3e-89b7-88a5caa1bf07 -# ╠═1c1b1cfd-dc7b-40f5-8a63-aa332d42d2f8 -# ╠═478e931b-3be1-44b1-ac4d-e470c574874f -# ╠═feda7416-1195-489f-991d-8a876507db45 -# ╠═2775bef8-9f19-48fa-a92f-536060e59aad -# ╠═a6f798cf-8ec1-4b3a-bebc-77c5371530be -# ╠═e936c5c3-f5c7-423d-846b-529f77499b34 -# ╟─9fb10ce6-9ea3-4857-bc4d-5b139d27eb06 -# ╠═1f512a86-6a42-4f3c-bb50-ebb53791c1b9 -# ╠═bdd4422c-0eea-4f08-b9ae-efc396c0bce4 -# ╠═44eccff8-f882-45aa-879e-3b245770196e -# ╠═c6792359-c10a-4c1a-a764-c12b85cf24e8 -# ╟─3539edb8-bb39-402a-8641-cadcedae905a -# ╠═274dc84c-b416-4f9e-8ff2-6ca0f08a40cf -# ╠═953eea61-f05f-4233-86aa-d5af3b47b41e -# ╠═9d1a8b9a-2b0c-4b8d-af31-1717e7a5ecd7 -# ╠═b222454b-6f4d-4d91-8374-a264873870bf -# ╠═7e6a43cb-8789-422c-80d2-6a154b576c56 -# ╠═1503a0c8-20ff-4821-8dc8-7299617628ef -# ╠═e5129e29-9281-4796-88b6-020d9e8d580c -# ╠═0c17b7d0-cb6e-4ccc-8685-1fa962aebebf -# ╠═9c82419f-3577-46a4-b759-2badbcd1411f -# ╠═450c557d-5e11-4061-b807-fffb429212f7 -# ╠═7a709a1a-e8b1-4c3f-abcb-e3facd87fee9 -# ╠═4b433a67-2a29-41c2-a04a-83572eb09dd2 -# ╠═79aa12f4-abef-479a-8644-25a9f5588f22 -# ╠═3648ec90-7fda-4047-b0dc-0c448f795431 -# ╠═52c42c16-03f7-4416-9180-835b7ed9d942 -# ╠═dca12cf4-6d3c-4899-8b70-c7d974705064 -# ╟─00000000-0000-0000-0000-000000000001 -# ╟─00000000-0000-0000-0000-000000000002 diff --git a/Examples_Notebooks/InferenceObjects.jl b/Examples_Notebooks/InferenceObjects.jl index 0bf5c31f..4d3e7679 100644 --- a/Examples_Notebooks/InferenceObjects.jl +++ b/Examples_Notebooks/InferenceObjects.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.19.16 +# v0.19.18 using Markdown using InteractiveUtils @@ -79,15 +79,8 @@ end; # ╔═╡ d572fb32-4ccf-4ba9-a995-48877e90f232 if success(rc) - idata = inferencedata(m_schools) - - nt = namedtuple(data) - - # Until InferenceObjects issue #36 is merged - ntu=(sigma=nt.sigma, J=[4], y=nt.y) - - idata = merge(idata, from_namedtuple(; observed_data = ntu)) - + idata = inferencedata(m_schools; log_likelihood_var=:log_lik, posterior_predictive_var=:y_hat) + idata = merge(idata, from_namedtuple(; observed_data = namedtuple(data))) else @warn "Sampling failed." end @@ -96,6 +89,9 @@ end # ╔═╡ 150f9cea-91da-4648-8469-dfb4c852227a md" ##### To see more details, click on any of the triangles above or specify group as shown below." +# ╔═╡ 3b2eee33-a2f2-4dc8-a4a1-89fa036a1385 +idata.posterior + # ╔═╡ 4d703d31-d03e-4c37-b4b9-c29f29b5cc62 if :observed_data in propertynames(idata) idata.observed_data @@ -113,6 +109,15 @@ post_schools = read_samples(m_schools, :dataframe; start=1001) # ╔═╡ 4da97b66-2c45-4c19-aa32-487a95fb23e9 posterior_schools = DataFrame(idata.posterior) +# ╔═╡ 8f52ef47-46e2-4028-83f1-c9cd183bc799 +DataFrame(inferencedata(m_schools).posterior) |> size + +# ╔═╡ 2e19a32a-4a26-4b53-8173-ea3d74eb19f4 +DataFrame(inferencedata(m_schools; dims=(theta=[:school], theta_tilde=[:school])).posterior) + +# ╔═╡ 30b9724d-73f4-4888-9698-b01f0ed1c720 +DataFrame(inferencedata(m_schools; dims=(theta=[:school], theta_tilde=[:school])).posterior) |> size + # ╔═╡ 00000000-0000-0000-0000-000000000001 PLUTO_PROJECT_TOML_CONTENTS = """ [deps] @@ -124,11 +129,11 @@ Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" StanSample = "c1514b29-d3a0-5178-b312-660c88baa699" [compat] -CSV = "~0.10.7" +CSV = "~0.10.8" DataFrames = "~1.4.4" -InferenceObjects = "~0.2.5" -NamedTupleTools = "~0.14.1" -StanSample = "~6.13.7" +InferenceObjects = "~0.3.0" +NamedTupleTools = "~0.14.2" +StanSample = "~6.13.8" """ # ╔═╡ 00000000-0000-0000-0000-000000000002 @@ -137,7 +142,7 @@ PLUTO_MANIFEST_TOML_CONTENTS = """ julia_version = "1.10.0-DEV" manifest_format = "2.0" -project_hash = "04f1bdf71c794e2f6ac06ca8d047f7f659ab5ecb" +project_hash = "ae44de63df444ba476e72c536643e3f4974df324" [[deps.ANSIColoredPrinters]] git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" @@ -156,9 +161,9 @@ version = "1.1.1" [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c46fb7dd1d8ca1d213ba25848a5ec4e47a1a1b08" +git-tree-sha1 = "badccc4459ffffb6bce5628461119b7057dec32c" uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.26" +version = "0.1.27" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -167,10 +172,10 @@ uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] -git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "SnoopPrecompile", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "8c73e96bd6817c2597cfd5615b91fca5deccf1af" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.7" +version = "0.10.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -240,9 +245,9 @@ version = "1.9.0" [[deps.DimensionalData]] deps = ["Adapt", "ArrayInterfaceCore", "ConstructionBase", "Dates", "Extents", "IntervalSets", "IteratorInterfaceExtensions", "LinearAlgebra", "Random", "RecipesBase", "SparseArrays", "Statistics", "TableTraits", "Tables"] -git-tree-sha1 = "0da97e5280d6e3d375e992f687c413a4789e1fa9" +git-tree-sha1 = "48eef48335b34aa69699a33060d4cea7b499024d" uuid = "0703355e-b756-11e9-17c0-8b28908087d0" -version = "0.23.1" +version = "0.23.2" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -250,9 +255,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "c36550cb29cbe373e95b3f40486b9a4148f89ffd" +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.2" +version = "0.9.3" [[deps.Documenter]] deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] @@ -296,10 +301,10 @@ uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" version = "0.2.2" [[deps.InferenceObjects]] -deps = ["Compat", "Dates", "DimensionalData"] -git-tree-sha1 = "96726b5b80563e1bccb453e0d1f7022ddbd5115b" +deps = ["Compat", "Dates", "DimensionalData", "Tables"] +git-tree-sha1 = "71bfda0025595c30cc162ac8a7019ab7e200866f" uuid = "b5cf5a8d-e756-4ee3-b014-01d49d192c00" -version = "0.2.5" +version = "0.3.0" [[deps.InlineStrings]] deps = ["Parsers"] @@ -390,9 +395,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2022.10.11" [[deps.NamedTupleTools]] -git-tree-sha1 = "17eeb975b00de066fb343aa8d56884f51d4a651c" +git-tree-sha1 = "e43cec005f0d7b51851669d3c4726dd4481aef80" uuid = "d9ec5142-1e00-5aa0-9d6a-321866360f50" -version = "0.14.1" +version = "0.14.2" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" @@ -416,9 +421,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "b64719e8b4504983c7fca6cc9db3ebc8acc2a4d6" +git-tree-sha1 = "6466e524967496866901a78fca3f2e9ea445a559" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.1" +version = "2.5.2" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -499,15 +504,15 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.StanBase]] deps = ["CSV", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "Documenter", "JSON", "NamedTupleTools", "Parameters", "Random", "Unicode"] -git-tree-sha1 = "9c1be7357e148627c5c2c0afaf2ba287fc81b48b" +git-tree-sha1 = "70258a57edc0eff2a1e11185b49c7d66e3de075b" uuid = "d0ee94f6-a23d-54aa-bbe9-7f572d6da7f5" -version = "4.7.4" +version = "4.7.5" [[deps.StanSample]] deps = ["CSV", "CompatHelperLocal", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "JSON", "NamedTupleTools", "OrderedCollections", "Parameters", "Random", "Reexport", "Requires", "Serialization", "StanBase", "TableOperations", "Tables", "Unicode"] -git-tree-sha1 = "7b8c4ab8bb993296e93a64d1a4a09b9f79b8ffb5" +git-tree-sha1 = "18c30df5440f6d569a570ef4b6f1afc7fc5586a6" uuid = "c1514b29-d3a0-5178-b312-660c88baa699" -version = "6.13.7" +version = "6.13.8" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] @@ -584,6 +589,11 @@ git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "1.4.2" +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" @@ -614,10 +624,14 @@ version = "17.4.0+0" # ╠═a1e486d9-ad7f-48ae-8d51-9ae446e6c030 # ╠═d572fb32-4ccf-4ba9-a995-48877e90f232 # ╟─150f9cea-91da-4648-8469-dfb4c852227a +# ╠═3b2eee33-a2f2-4dc8-a4a1-89fa036a1385 # ╠═4d703d31-d03e-4c37-b4b9-c29f29b5cc62 # ╠═8a6367b7-92f9-498e-874d-868b0a402d3e # ╠═5bf5c448-5b76-4c77-9529-9106f94bc1ef # ╠═9a15cd96-2863-4b87-b3eb-3d14fb128b6d # ╠═4da97b66-2c45-4c19-aa32-487a95fb23e9 +# ╠═8f52ef47-46e2-4028-83f1-c9cd183bc799 +# ╠═2e19a32a-4a26-4b53-8173-ea3d74eb19f4 +# ╠═30b9724d-73f4-4888-9698-b01f0ed1c720 # ╟─00000000-0000-0000-0000-000000000001 # ╟─00000000-0000-0000-0000-000000000002 diff --git a/Examples_Notebooks/PosteriorDB.jl b/Examples_Notebooks/PosteriorDB.jl index 9c274e67..8b7f588d 100644 --- a/Examples_Notebooks/PosteriorDB.jl +++ b/Examples_Notebooks/PosteriorDB.jl @@ -10,8 +10,9 @@ using Pkg # ╔═╡ e4d98ecf-1dd3-414b-ba5c-b6a7d71df3eb begin using DataFrames + using Statistics using PosteriorDB - using Stan + using StanSample end # ╔═╡ 34a9e246-547e-11ed-2c8e-5d545ad2b268 @@ -39,13 +40,13 @@ posterior_names(pdb) dataset_names(pdb) # ╔═╡ 54dd2074-76f0-4bd7-9406-94e9720d0daf -post = posterior(pdb, "eight_schools-eight_schools_centered") +posterior_pdb = posterior(pdb, "eight_schools-eight_schools_centered") # ╔═╡ a0260880-429c-4888-a4be-9b1d6457de53 -mod = model(post) +mod = model(posterior_pdb) # ╔═╡ 829195fc-adab-4f39-a69c-4c5c8d4916db -info(post) +info(posterior_pdb) # ╔═╡ 8feb8740-b286-4877-8587-7fde4419f90d begin @@ -57,7 +58,7 @@ end impl = implementation(mod, "stan") # ╔═╡ 438253a2-5b62-46f9-a85e-8a89e42e1c82 -let +begin code = load(impl) println(code) end @@ -66,19 +67,19 @@ end info(mod) # ╔═╡ 0247e72a-afc8-4072-9fd6-78b4a0e1baf7 -data = dataset(post) +post = dataset(posterior_pdb) # ╔═╡ e18e0655-1785-47e6-a322-d7e2f84e6f6f -info(data) +info(posterior_pdb) # ╔═╡ 302ce3e8-e3c0-4111-8065-71a3b622779f -path(data) +path(post) # ╔═╡ a9ba650f-76f3-483e-bc3a-c0ff039e08c8 -load(data) +data = load(post) # ╔═╡ 69c80caa-cc31-4409-9f73-2580e7620fd2 -ref = reference_posterior(post) +ref = reference_posterior(posterior_pdb) # ╔═╡ 719112ef-f399-4664-8843-16723289bd1d info(ref) @@ -87,7 +88,21 @@ info(ref) path(ref) # ╔═╡ 26030da6-920f-47bd-ad55-29444e78c1c8 -DataFrame(load(ref)) +pdb_df = DataFrame(load(ref)) + +# ╔═╡ 20738a8e-a50d-4682-884b-a84e33e6146a +pdb_df.mu + +# ╔═╡ 4ac7fa99-6ba1-46dd-abae-ed0655a71f6f +begin + sm = SampleModel("PDB", code) + rc = stan_sample(sm; data) +end; + +# ╔═╡ 1e6593dd-956e-40b1-a715-6223fc7c56d8 +if success(rc) + df = read_samples(sm, :dataframe) +end # ╔═╡ 00000000-0000-0000-0000-000000000001 PLUTO_PROJECT_TOML_CONTENTS = """ @@ -95,12 +110,13 @@ PLUTO_PROJECT_TOML_CONTENTS = """ DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" PosteriorDB = "1c4bc282-d2f5-44f9-b6d1-8c4424a23ad4" -Stan = "682df890-35be-576f-97d0-3d8c8b33a550" +StanSample = "c1514b29-d3a0-5178-b312-660c88baa699" +Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [compat] DataFrames = "~1.4.4" PosteriorDB = "~0.3.1" -Stan = "~9.10.3" +StanSample = "~6.13.7" """ # ╔═╡ 00000000-0000-0000-0000-000000000002 @@ -109,216 +125,35 @@ PLUTO_MANIFEST_TOML_CONTENTS = """ julia_version = "1.10.0-DEV" manifest_format = "2.0" -project_hash = "2bc51eaf36066fb2ab3481a94ed6efa1ea014ce1" +project_hash = "6d33b3d450b408a8aa6cd319e36f66b7d977b0a9" [[deps.ANSIColoredPrinters]] git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" version = "0.0.1" -[[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "5c26c7759412ffcaf0dd6e3172e55d783dd7610b" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.1.3" - -[[deps.AbstractTrees]] -git-tree-sha1 = "52b3b436f8f73133d7bc3a6c71ee7ed6ab2ab754" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.3" - -[[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "195c5505521008abea5aee4f96930717958eac6f" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.4.0" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["ArrayInterfaceCore", "Compat", "IfElse", "LinearAlgebra", "Static"] -git-tree-sha1 = "6d0918cb9c0d3db7fe56bea2bc8638fc4014ac35" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "6.0.24" - -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c46fb7dd1d8ca1d213ba25848a5ec4e47a1a1b08" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.26" - -[[deps.ArrayInterfaceOffsetArrays]] -deps = ["ArrayInterface", "OffsetArrays", "Static"] -git-tree-sha1 = "3d1a9a01976971063b3930d1aed1d9c4af0817f8" -uuid = "015c0d05-e682-4f19-8f0a-679ce4c54826" -version = "0.1.7" - -[[deps.ArrayInterfaceStaticArrays]] -deps = ["Adapt", "ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "LinearAlgebra", "Static", "StaticArrays"] -git-tree-sha1 = "f12dc65aef03d0a49650b20b2fdaf184928fd886" -uuid = "b0d46f97-bff5-4637-a19a-dd75974142cd" -version = "0.1.5" - -[[deps.ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" - [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "1dd4d9f5beebac0c03446918741b1a03dc5e5788" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.6" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] -git-tree-sha1 = "7fe6d92c4f281cf4ca6f2fba0ce7b299742da7ca" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.37" - [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.5" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "Static"] -git-tree-sha1 = "a7157ab6bcda173f533db4c93fc8a27a48843757" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.1.30" - [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" version = "0.10.7" -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e7ff6cadf743c098e08fca25c91103ee4303c9bb" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.15.6" - -[[deps.ChangesOfVariables]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "38f7a08f19d8810338d4f5085211c7dfa5d5bdd8" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.4" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.0" -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random", "SnoopPrecompile"] -git-tree-sha1 = "aa3edc8f8dea6cbfa176ee12f7c2fc82f0608ed3" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.20.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"] -git-tree-sha1 = "d08c20eef1f2cbc6e60fd3612ac4340b89fea322" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.9.9" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "417b0ed7b8b838aa6ca0a87aadf1bb9eb111ce40" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.8" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - [[deps.Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" @@ -336,34 +171,6 @@ deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.0.1+0" -[[deps.CompositionsBase]] -git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" @@ -391,67 +198,20 @@ git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" version = "1.0.0" -[[deps.DataValues]] -deps = ["DataValueInterfaces", "Dates"] -git-tree-sha1 = "d88a19299eba280a6d062e135a43f00323ae70bf" -uuid = "e7dc6d0d-1eca-5fa6-8ad6-5aecde8b7ea5" -version = "0.4.13" - [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "19b1417ff479c07e523fcbf2fd735a3fde3d1ab3" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.0" -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" - -[[deps.DimensionalData]] -deps = ["Adapt", "ArrayInterfaceCore", "ConstructionBase", "Dates", "Extents", "IntervalSets", "IteratorInterfaceExtensions", "LinearAlgebra", "Random", "RecipesBase", "SparseArrays", "Statistics", "TableTraits", "Tables"] -git-tree-sha1 = "0da97e5280d6e3d375e992f687c413a4789e1fa9" -uuid = "0703355e-b756-11e9-17c0-8b28908087d0" -version = "0.23.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" - [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" -[[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "a7756d098cbabec6b3ac44f369f74915e8cfd70a" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.79" - [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "c36550cb29cbe373e95b3f40486b9a4148f89ffd" @@ -469,47 +229,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" - -[[deps.Extents]] -git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99" -uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.1" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" @@ -519,210 +238,42 @@ version = "0.9.20" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "802bfc139833d2ba893dd9e62ba1767c88d708ae" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.5" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - [[deps.Formatting]] deps = ["Printf"] git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.32" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.10.4+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "051072ff2accc6e0e87b708ddee39b18aa04a0bc" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.1" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "501a4bf76fd679e7fcd678725d5072177392e756" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.1+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "fb83fbe02fe57f2c068013aa94bcdf6760d3a7a7" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.74.0+1" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "e1acc37ed078d99a714ed8376446f92a5535ca65" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.5.5" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "f64b890b2efa4de81520d2b0fbdc9aadb65bdf53" -uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.13" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"] -git-tree-sha1 = "709d864e3ed6e3545230601f94e11ebc65994641" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.11" - [[deps.IOCapture]] deps = ["Logging", "Random"] git-tree-sha1 = "f7be53659ab06ddc986428d3a9dcc95f6fa6705a" uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" version = "0.2.2" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - -[[deps.InferenceObjects]] -deps = ["Compat", "Dates", "DimensionalData"] -git-tree-sha1 = "96726b5b80563e1bccb453e0d1f7022ddbd5115b" -uuid = "b5cf5a8d-e756-4ee3-b014-01d49d192c00" -version = "0.2.5" - -[[deps.IniFile]] -git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" -uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f" -version = "0.5.1" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - [[deps.InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "0cf92ec945125946352f3d46c96976ab972bde6f" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" version = "1.3.2" -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "d979e54b71da82f3a65b62553da4fc3d18c9004c" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2018.0.3+2" - [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "842dd89a6cb75e02e85fdd75c760cdc43f5d6863" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.6" - -[[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] -git-tree-sha1 = "16c0cc91853084cb5f58a78bd209513900206ce6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.4" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "49510dfcb407e572524ba94aeae2fced1f3feb0f" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.8" - [[deps.InvertedIndices]] git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.2.0" -[[deps.IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" - -[[deps.IterTools]] -git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.4.0" - [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" - [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" @@ -735,63 +286,11 @@ git-tree-sha1 = "84b10656a41ef564c39d2d477d7236966d2b5683" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" version = "1.12.0" -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "9816b296736292a80b9a3200eb7fbb57aaa3917a" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.5" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.0" -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "ab9aa169d2160129beb241cb2750ca499b4e90e9" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.15.17" - -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"] -git-tree-sha1 = "7e34177793212f6d64d045ee47d2883f09fffacc" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.12" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -814,134 +313,22 @@ version = "1.10.2+0" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+1" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.4.0+0" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -[[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "946607f84feb96220f480e0422d3484c49c00239" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.19" - [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "5d4d2d9904227b8bd66386c1138cf4d5ffa826bf" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "0.4.9" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Compat", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "f5f347b828fd95ece7398f412c81569789361697" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.5.0" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "dab8e9e9cd714fd3adc2344a97504e7e64e78546" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.1.5" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "c8b7e632d6754a5e36c0d94a4b466a5ba3a30128" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.8.0" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.10" - -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.0+0" -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" - [[deps.Missings]] deps = ["DataAPI"] git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f" @@ -951,121 +338,29 @@ version = "1.0.2" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" -[[deps.MonteCarloMeasurements]] -deps = ["Distributed", "Distributions", "ForwardDiff", "LinearAlgebra", "MacroTools", "Random", "RecipesBase", "Requires", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase", "Test"] -git-tree-sha1 = "f2bf57ea9524d654e454a8a7c9a88ff7e91278d9" -uuid = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" -version = "1.0.12" - [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2022.10.11" -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" - [[deps.NamedTupleTools]] git-tree-sha1 = "17eeb975b00de066fb343aa8d56884f51d4a651c" uuid = "d9ec5142-1e00-5aa0-9d6a-321866360f50" version = "0.14.1" -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "440165bf08bc500b8fe4a7be2dc83271a00c0716" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.12" - [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" version = "0.3.21+0" -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "df6830e37943c7aaa10023471ca47fb3065cc3c4" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.2" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - [[deps.OrderedCollections]] git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.1" -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" - [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" @@ -1078,40 +373,11 @@ git-tree-sha1 = "b64719e8b4504983c7fca6cc9db3ebc8acc2a4d6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.5.1" -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.40.1+0" - [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" version = "1.8.0" -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "SnoopPrecompile", "Statistics"] -git-tree-sha1 = "5b7690dd212e026bbab1860016a6601cb077ab66" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.2" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "7c5d624a2cb080c2bf41dc5da8fbb837c427048a" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.37.0" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7" @@ -1124,12 +390,6 @@ git-tree-sha1 = "574cb927d335c7caed89342e714cb6bd50051e1b" uuid = "1c4bc282-d2f5-44f9-b6d1-8c4424a23ad4" version = "0.3.1" -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.3.0" - [[deps.PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" @@ -1140,30 +400,6 @@ version = "2.2.2" deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.7.2" - -[[deps.Qt5Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] -git-tree-sha1 = "0c03844e2231e12fda4d0086fd7cbe4098ee8dc5" -uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1" -version = "5.15.3+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "97aa253e65b784fd13e83774cadc95b38011d734" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.6.0" - [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1172,84 +408,21 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" deps = ["SHA", "Serialization"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "dc84268fe0e3335a62e315a3a7cf2afa7178a734" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.3" - -[[deps.RecipesBase]] -deps = ["SnoopPrecompile"] -git-tree-sha1 = "18c35ed630d7229c5584b945641a73ca83fb5213" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.2" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase", "SnoopPrecompile"] -git-tree-sha1 = "e974477be88cb5e3040009f3767611bc6357846f" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.11" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" - [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "bf3188feca147ce108c76ad82c2792c57abe7b1f" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.0" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.3.0+0" - [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "c8679919df2d3c71f74451321f1efea6433536cc" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.37" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" - [[deps.SentinelArrays]] deps = ["Dates", "Random"] git-tree-sha1 = "efd23b378ea5f2db53a55ae53d3133de4e080aa9" @@ -1259,27 +432,6 @@ version = "1.3.16" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - [[deps.SnoopPrecompile]] git-tree-sha1 = "f604441450a3c0569830946e5b33b78c928e1a85" uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" @@ -1298,47 +450,11 @@ version = "1.1.0" deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -[[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.Stan]] -deps = ["CSV", "CompatHelperLocal", "DataFrames", "DataStructures", "DimensionalData", "Distributions", "DocStringExtensions", "InferenceObjects", "JSON", "JSON3", "MCMCChains", "MonteCarloMeasurements", "NamedArrays", "NamedTupleTools", "PosteriorDB", "Random", "StanBase", "StanDiagnose", "StanOptimize", "StanQuap", "StanSample", "StanVariational", "Statistics", "StatsBase", "StatsFuns", "StatsPlots", "Tables", "Test"] -git-tree-sha1 = "b837f483b648011c5ac7c0e022329efd8ad85e6a" -uuid = "682df890-35be-576f-97d0-3d8c8b33a550" -version = "9.10.3" - [[deps.StanBase]] deps = ["CSV", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "Documenter", "JSON", "NamedTupleTools", "Parameters", "Random", "Unicode"] -git-tree-sha1 = "9c1be7357e148627c5c2c0afaf2ba287fc81b48b" +git-tree-sha1 = "70258a57edc0eff2a1e11185b49c7d66e3de075b" uuid = "d0ee94f6-a23d-54aa-bbe9-7f572d6da7f5" -version = "4.7.4" - -[[deps.StanDiagnose]] -deps = ["CSV", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "Documenter", "Random", "Reexport", "StanBase", "Statistics", "Test", "Unicode"] -git-tree-sha1 = "3da66c7ebdd3ac179dfde9331e04a4541d944ac6" -uuid = "fb13fc95-9a72-5e81-90ef-432a29d7f4c2" -version = "4.3.3" - -[[deps.StanOptimize]] -deps = ["CSV", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "Documenter", "NamedTupleTools", "Parameters", "Random", "Reexport", "StanBase", "Statistics", "Test", "Unicode"] -git-tree-sha1 = "33776c4ae944c7f24cb465eb1017bff14190eee6" -uuid = "fbd8da12-e93d-5a64-9231-612a0707ab99" -version = "4.2.4" - -[[deps.StanQuap]] -deps = ["CSV", "DataFrames", "Distributions", "DocStringExtensions", "LinearAlgebra", "MonteCarloMeasurements", "NamedTupleTools", "OrderedCollections", "Reexport", "StanBase", "StanOptimize", "StanSample", "Statistics", "StatsBase"] -git-tree-sha1 = "ca2f17933f781a1320839ad53da93426e818740c" -uuid = "e4723793-2808-4fc5-8a98-c57f4c160c53" -version = "4.2.3" +version = "4.7.5" [[deps.StanSample]] deps = ["CSV", "CompatHelperLocal", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "JSON", "NamedTupleTools", "OrderedCollections", "Parameters", "Random", "Reexport", "Requires", "Serialization", "StanBase", "TableOperations", "Tables", "Unicode"] @@ -1346,64 +462,11 @@ git-tree-sha1 = "7b8c4ab8bb993296e93a64d1a4a09b9f79b8ffb5" uuid = "c1514b29-d3a0-5178-b312-660c88baa699" version = "6.13.7" -[[deps.StanVariational]] -deps = ["CSV", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "Documenter", "NamedTupleTools", "Parameters", "Reexport", "StanBase", "StanSample", "Statistics", "Unicode"] -git-tree-sha1 = "60b7e872c1988bcb1449c56b74be7c0776d183b9" -uuid = "6ede68ce-8466-5085-8a79-4c4de3d9cf4a" -version = "4.2.3" - -[[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "c35b107b61e7f34fa3f124026f2a9be97dea9e1c" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.3" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "ffc098086f35909741f71ce21d03dadf0d2bfa76" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.11" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.0" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" version = "1.9.0" -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f9af7f195fb13589dd2e2d57fdb401717d2eb1f6" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.5.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" - -[[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "e0d5bc26226ab1b7648278169858adcfbd861780" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.4" - [[deps.StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" @@ -1415,10 +478,6 @@ git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.10.0" -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" @@ -1452,18 +511,6 @@ deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f53e34e784ae771eb9ccde4d72e578aa453d0554" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.6" - [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" @@ -1474,17 +521,6 @@ git-tree-sha1 = "e4bdc63f5c6d62e80eb1c0043fcc0360d5950ff7" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.9.10" -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.75" - -[[deps.URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" - [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" @@ -1497,191 +533,12 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] -git-tree-sha1 = "fc79d0f926592ecaeaee164f6a4ca81b51115c3b" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.56" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "3e61f0b86f90dacb0bc0e73a0c5a83f6a8636e23" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.19.0+0" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "1.4.2" -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "58443b63fb7e465a8a7210828c91c08b92132dff" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.14+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.6.9+4" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.0+4" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.2+4" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.27.0+4" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" - [[deps.ZipFile]] deps = ["Libdl", "Printf", "Zlib_jll"] git-tree-sha1 = "f492b7fe1698e623024e873244f10d89c95c340a" @@ -1693,59 +550,11 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.13+0" -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" - -[[deps.ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.2.0+0" -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" @@ -1755,24 +564,6 @@ version = "1.48.0+0" deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+0" """ # ╔═╡ Cell order: @@ -1798,5 +589,8 @@ version = "1.4.1+0" # ╠═719112ef-f399-4664-8843-16723289bd1d # ╠═9e152cf5-2916-42a5-85cb-2c41e3590c3a # ╠═26030da6-920f-47bd-ad55-29444e78c1c8 +# ╠═20738a8e-a50d-4682-884b-a84e33e6146a +# ╠═4ac7fa99-6ba1-46dd-abae-ed0655a71f6f +# ╠═1e6593dd-956e-40b1-a715-6223fc7c56d8 # ╟─00000000-0000-0000-0000-000000000001 # ╟─00000000-0000-0000-0000-000000000002 diff --git a/Examples_Notebooks/PosteriorDB_01.jl b/Examples_Notebooks/PosteriorDB_01.jl new file mode 100644 index 00000000..d0abb45f --- /dev/null +++ b/Examples_Notebooks/PosteriorDB_01.jl @@ -0,0 +1,588 @@ +### A Pluto.jl notebook ### +# v0.19.17 + +using Markdown +using InteractiveUtils + +# ╔═╡ 9339e545-32ee-4304-ba49-d34befb45fe3 +using Pkg + +# ╔═╡ e4d98ecf-1dd3-414b-ba5c-b6a7d71df3eb +begin + using DataFrames + using Statistics + using PosteriorDB + using StanSample +end + +# ╔═╡ 34a9e246-547e-11ed-2c8e-5d545ad2b268 +html""" + +""" + +# ╔═╡ 22ffe9ac-a7d7-4066-a6a0-58e0b60d0352 +pdb = database() + +# ╔═╡ 97fd910a-2972-48f9-a512-e5975b51351f +pdb.path + +# ╔═╡ bdf2a2eb-89df-401f-b113-6ea178d67500 +posterior_names(pdb) + +# ╔═╡ 5cebec86-cb13-4bf2-850a-3c6510e3fb5e +dataset_names(pdb) + +# ╔═╡ 54dd2074-76f0-4bd7-9406-94e9720d0daf +posterior_pdb = posterior(pdb, "M0_data-M0_model") + +# ╔═╡ a0260880-429c-4888-a4be-9b1d6457de53 +mod = model(posterior_pdb) + +# ╔═╡ 829195fc-adab-4f39-a69c-4c5c8d4916db +info(posterior_pdb) + +# ╔═╡ 8feb8740-b286-4877-8587-7fde4419f90d +begin + mod_code = implementation(mod, "stan") + mod_code +end + +# ╔═╡ 46d29033-58c8-48a0-998e-944ad9d0ee62 +impl = implementation(mod, "stan") + +# ╔═╡ 438253a2-5b62-46f9-a85e-8a89e42e1c82 +begin + code = load(impl) + println(code) +end + +# ╔═╡ 3068fb12-0c37-466d-9721-99f746006f03 +info(mod) + +# ╔═╡ 0247e72a-afc8-4072-9fd6-78b4a0e1baf7 +post = dataset(posterior_pdb) + +# ╔═╡ 32831937-e82c-41b3-83bd-0f25a62b6540 +DataFrame(post.posterior) + +# ╔═╡ e18e0655-1785-47e6-a322-d7e2f84e6f6f +info(posterior_pdb) + +# ╔═╡ 302ce3e8-e3c0-4111-8065-71a3b622779f +path(post) + +# ╔═╡ a9ba650f-76f3-483e-bc3a-c0ff039e08c8 +data = load(post) + +# ╔═╡ 48e0b38c-e72b-439d-aac4-dad55f8c05bc +data["y"] = data["y"]' + +# ╔═╡ b201d58c-2145-4f02-aedf-c56bb71aa527 +model_1=model(posterior_pdb) + +# ╔═╡ 4ac7fa99-6ba1-46dd-abae-ed0655a71f6f +begin + sm = SampleModel("PDB", code) + rc = stan_sample(sm; data) +end; + +# ╔═╡ 1e6593dd-956e-40b1-a715-6223fc7c56d8 +if success(rc) + df = read_samples(sm, :dataframe) +end + +# ╔═╡ 00000000-0000-0000-0000-000000000001 +PLUTO_PROJECT_TOML_CONTENTS = """ +[deps] +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +PosteriorDB = "1c4bc282-d2f5-44f9-b6d1-8c4424a23ad4" +StanSample = "c1514b29-d3a0-5178-b312-660c88baa699" +Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[compat] +DataFrames = "~1.4.4" +PosteriorDB = "~0.3.1" +StanSample = "~6.13.7" +""" + +# ╔═╡ 00000000-0000-0000-0000-000000000002 +PLUTO_MANIFEST_TOML_CONTENTS = """ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0-DEV" +manifest_format = "2.0" +project_hash = "67fbb3a1844a1c0ebfac7799670a254337429f45" + +[[deps.ANSIColoredPrinters]] +git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" +uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" +version = "0.0.1" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] +git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.0" + +[[deps.Compat]] +deps = ["Dates", "LinearAlgebra", "UUIDs"] +git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.5.0" + +[[deps.CompatHelperLocal]] +deps = ["DocStringExtensions", "Pkg", "UUIDs"] +git-tree-sha1 = "be25ab802a22a212ce4da944fe60d7c250ddcfe1" +uuid = "5224ae11-6099-4aaa-941d-3aab004bd678" +version = "0.1.25" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.1+0" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.13.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.4.4" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.13" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "19b1417ff479c07e523fcbf2fd735a3fde3d1ab3" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.0" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "c36550cb29cbe373e95b3f40486b9a4148f89ffd" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.2" + +[[deps.Documenter]] +deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] +git-tree-sha1 = "6030186b00a38e9d0434518627426570aac2ef95" +uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" +version = "0.27.23" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.20" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.Formatting]] +deps = ["Printf"] +git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" +version = "0.4.2" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.IOCapture]] +deps = ["Logging", "Random"] +git-tree-sha1 = "f7be53659ab06ddc986428d3a9dcc95f6fa6705a" +uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" +version = "0.2.2" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "0cf92ec945125946352f3d46c96976ab972bde6f" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.3.2" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.InvertedIndices]] +git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.2.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.3" + +[[deps.JSON3]] +deps = ["Dates", "Mmap", "Parsers", "SnoopPrecompile", "StructTypes", "UUIDs"] +git-tree-sha1 = "84b10656a41ef564c39d2d477d7236966d2b5683" +uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" +version = "1.12.0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.3" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "7.84.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.10.2+0" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.0+0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.0.2" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2022.10.11" + +[[deps.NamedTupleTools]] +git-tree-sha1 = "17eeb975b00de066fb343aa8d56884f51d4a651c" +uuid = "d9ec5142-1e00-5aa0-9d6a-321866360f50" +version = "0.14.1" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.21+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.4.1" + +[[deps.Parameters]] +deps = ["OrderedCollections", "UnPack"] +git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" +uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" +version = "0.12.3" + +[[deps.Parsers]] +deps = ["Dates", "SnoopPrecompile"] +git-tree-sha1 = "b64719e8b4504983c7fca6cc9db3ebc8acc2a4d6" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.5.1" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.8.0" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.2" + +[[deps.PosteriorDB]] +deps = ["Artifacts", "Compat", "JSON3", "ZipFile"] +git-tree-sha1 = "574cb927d335c7caed89342e714cb6bd50051e1b" +uuid = "1c4bc282-d2f5-44f9-b6d1-8c4424a23ad4" +version = "0.3.1" + +[[deps.PrettyTables]] +deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.2.2" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA", "Serialization"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "efd23b378ea5f2db53a55ae53d3133de4e080aa9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.3.16" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.SnoopPrecompile]] +git-tree-sha1 = "f604441450a3c0569830946e5b33b78c928e1a85" +uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" +version = "1.0.1" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.1.0" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + +[[deps.StanBase]] +deps = ["CSV", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "Documenter", "JSON", "NamedTupleTools", "Parameters", "Random", "Unicode"] +git-tree-sha1 = "70258a57edc0eff2a1e11185b49c7d66e3de075b" +uuid = "d0ee94f6-a23d-54aa-bbe9-7f572d6da7f5" +version = "4.7.5" + +[[deps.StanSample]] +deps = ["CSV", "CompatHelperLocal", "DataFrames", "DelimitedFiles", "Distributed", "DocStringExtensions", "JSON", "NamedTupleTools", "OrderedCollections", "Parameters", "Random", "Reexport", "Requires", "Serialization", "StanBase", "TableOperations", "Tables", "Unicode"] +git-tree-sha1 = "7b8c4ab8bb993296e93a64d1a4a09b9f79b8ffb5" +uuid = "c1514b29-d3a0-5178-b312-660c88baa699" +version = "6.13.7" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.9.0" + +[[deps.StringManipulation]] +git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.0" + +[[deps.StructTypes]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" +uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" +version = "1.10.0" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "5.10.1+0" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] +git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.10.0" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.TranscodingStreams]] +deps = ["Random", "Test"] +git-tree-sha1 = "e4bdc63f5c6d62e80eb1c0043fcc0360d5950ff7" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.9.10" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.UnPack]] +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" +uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +version = "1.0.2" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.ZipFile]] +deps = ["Libdl", "Printf", "Zlib_jll"] +git-tree-sha1 = "f492b7fe1698e623024e873244f10d89c95c340a" +uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea" +version = "0.10.1" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.2.0+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.48.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+0" +""" + +# ╔═╡ Cell order: +# ╠═34a9e246-547e-11ed-2c8e-5d545ad2b268 +# ╠═9339e545-32ee-4304-ba49-d34befb45fe3 +# ╠═e4d98ecf-1dd3-414b-ba5c-b6a7d71df3eb +# ╠═22ffe9ac-a7d7-4066-a6a0-58e0b60d0352 +# ╠═97fd910a-2972-48f9-a512-e5975b51351f +# ╠═bdf2a2eb-89df-401f-b113-6ea178d67500 +# ╠═5cebec86-cb13-4bf2-850a-3c6510e3fb5e +# ╠═54dd2074-76f0-4bd7-9406-94e9720d0daf +# ╠═a0260880-429c-4888-a4be-9b1d6457de53 +# ╠═829195fc-adab-4f39-a69c-4c5c8d4916db +# ╠═8feb8740-b286-4877-8587-7fde4419f90d +# ╠═46d29033-58c8-48a0-998e-944ad9d0ee62 +# ╠═438253a2-5b62-46f9-a85e-8a89e42e1c82 +# ╠═3068fb12-0c37-466d-9721-99f746006f03 +# ╠═0247e72a-afc8-4072-9fd6-78b4a0e1baf7 +# ╠═32831937-e82c-41b3-83bd-0f25a62b6540 +# ╠═e18e0655-1785-47e6-a322-d7e2f84e6f6f +# ╠═302ce3e8-e3c0-4111-8065-71a3b622779f +# ╠═a9ba650f-76f3-483e-bc3a-c0ff039e08c8 +# ╠═48e0b38c-e72b-439d-aac4-dad55f8c05bc +# ╠═b201d58c-2145-4f02-aedf-c56bb71aa527 +# ╠═4ac7fa99-6ba1-46dd-abae-ed0655a71f6f +# ╠═1e6593dd-956e-40b1-a715-6223fc7c56d8 +# ╟─00000000-0000-0000-0000-000000000001 +# ╟─00000000-0000-0000-0000-000000000002 diff --git a/Project.toml b/Project.toml index 08ce753d..daf42114 100644 --- a/Project.toml +++ b/Project.toml @@ -43,7 +43,7 @@ DataStructures = "0.18.13" DimensionalData = "0.23" Distributions = "0.25" DocStringExtensions = "0.9" -InferenceObjects = "0.2" +InferenceObjects = "0.3" JSON = "0.21" JSON3 = "1.12" MCMCChains = "5.5" @@ -55,7 +55,7 @@ StanBase = "4" StanDiagnose = "4" StanOptimize = "4" StanQuap = "4" -StanSample = "6.13.7" +StanSample = "6.13.8" StanVariational = "4" StatsBase = "0.33" StatsFuns = "1" diff --git a/README.md b/README.md index d9f20d42..4a710a58 100644 --- a/README.md +++ b/README.md @@ -34,7 +34,7 @@ In Stan.jl v7 all of cmdstan's methods were moved to separate packages, i.e. Sta Stan.jl v9 uses StanSample.jl v6, StanOptimize.jl v4, StanQuap.jl v4, StanDiagnose.jl v4 and StanVariational v4 and supports multithreading on C++ level. Stan.jl v9 also uses JSON.jl to generate data and init input files for cmdstan. -Stan.jl v9 also supports BridgeStan.jl, InferenceObjects.jl and PosteriorDB.jl. See the example notebooks in the Examples_Notebooks subdirectory. Note that these are new packages and updates are to be expected. +Stan.jl v9 also supports InferenceObjects.jl and PosteriorDB.jl. See the example notebooks in the Examples_Notebooks subdirectory. Note that these are new packages and updates are to be expected. Unfortunately BridgeStan v1.0 is no longer supported. The StanJulia ecosystem includes 2 additional packages, StanQuap.jl (to compute [MAP](https://en.wikipedia.org/wiki/Maximum_a_posteriori_estimation) estimates) and DiffEqBayesStan.jl. diff --git a/test/runtests.jl b/test/runtests.jl index 7628a111..c8429150 100644 --- a/test/runtests.jl +++ b/test/runtests.jl @@ -52,7 +52,7 @@ examples = [ "Examples/Dyes/dyes.jl", "Examples/EightSchools/schools8.jl", "Examples/InferenceData/inferencedata.jl", - "Examples/BridgeStan/bridgestan.jl", + #"Examples/BridgeStan/bridgestan.jl", "Examples/PosteriorDB/posteriordb.jl", "Examples_Stan_Methods/Diagnose/diagnose.jl", @@ -86,6 +86,8 @@ if haskey(ENV, "JULIA_CMDSTAN_HOME") || haskey(ENV, "CMDSTAN") end end + + println("Tests completed.") else println("\nCMDSTAN or JULIA_CMDSTAN_HOME not set. Skipping tests") end