[Container Request]: update ncbi-amrfinderplus to 4.0.3 and db version 2024-10-22.1

[kapsakcj]

What tool are you looking for and why?

New release, hot off the press. Includes stxtyper.

https://github.com/ncbi/amr/releases/tag/amrfinder_v4.0.3

I can update this one, unless someone else beats me to it.

[kapsakcj]

FYI the amrfinder pre-compiled binaries also includes stxtyper (among other dependencies), so no need to install stxtyper separately.

Here's what's extracted from the tarball of binaries

# download binaries
wget https://github.com/ncbi/amr/releases/download/amrfinder_v4.0.3/amrfinder_binaries_v4.0.3.tar.gz

# extract into dir called amrfinder-binaries/
tar xzf amrfinder_binaries_v4.0.3.tar.gz -C amrfinder-binaries/

# change into dir
cd amrfinder-binaries/

# list contents and contents of stx/ subdir
$ ls . && echo && ls stx/
amr_report  amrfinder_index   dna_mutation  fasta_check    gff_check  stx       test_amrfinder.sh   test_dna.expected  test_dna_mut_all.expected  test_prot.fa   version.txt
amrfinder   amrfinder_update  fasta2parts   fasta_extract  mutate     stxtyper  test_both.expected  test_dna.fa        test_prot.expected         test_prot.gff

fasta_check  fasta_extract  stx.prot  stxtyper  test  test_stxtyper.sh  version.txt

we may need to adjust how the tests are run depending on where these files are located in the docker container's filesystem