From c96f22f7a5ca9fa6385a129f6f0241025fb1139b Mon Sep 17 00:00:00 2001
From: Kincekara <kutluhanincekara@hotmail.com>
Date: Thu, 26 Oct 2023 21:30:03 +0000
Subject: [PATCH] fix test

---
 checkm/1.2.2/Dockerfile | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/checkm/1.2.2/Dockerfile b/checkm/1.2.2/Dockerfile
index b1866923d..571add7de 100644
--- a/checkm/1.2.2/Dockerfile
+++ b/checkm/1.2.2/Dockerfile
@@ -44,7 +44,6 @@ RUN wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_
     mkdir checkm_db && tar -C checkm_db -xvf checkm_data_2015_01_16.tar.gz &&\
     checkm data setRoot checkm_db 
 
-# run an internal test
-RUN checkm test ./checkm_test_results &&\
-    tail -n2 ./checkm_test_results/checkm.log &&\
-    head ./checkm_test_results/results/qa_test.tsv
+# run test with internal test data
+RUN checkm lineage_wf -r ./checkm_db/test_data/ ./checkm_test_results
+