diff --git a/README.md b/README.md index e4059fbf3..b49d7f853 100644 --- a/README.md +++ b/README.md @@ -136,7 +136,7 @@ To learn more about the docker pull rate limits and the open source software pro | [cutshaw-report-env](https://hub.docker.com/r/staphb/cutshaw-report-env)
[![docker pulls](https://badgen.net/docker/pulls/staphb/cutshaw-report-env)](https://hub.docker.com/r/staphb/cutshaw-report-env) | | https://github.com/VADGS/CutShaw | | [datasets-sars-cov-2](https://github.com/CDCgov/datasets-sars-cov-2)
[![docker pulls](https://badgen.net/docker/pulls/staphb/datasets-sars-cov-2)](https://hub.docker.com/r/staphb/datasets-sars-cov-2) | | https://github.com/CDCgov/datasets-sars-cov-2 | | [dnaapler](https://hub.docker.com/r/staphb/dnaapler)
[![docker pulls](https://badgen.net/docker/pulls/staphb/dnaapler)](https://hub.docker.com/r/staphb/dnaapler) | | https://github.com/gbouras13/dnaapler | -| [dragonflye](https://hub.docker.com/r/staphb/dragonflye)
[![docker pulls](https://badgen.net/docker/pulls/staphb/dragonflye)](https://hub.docker.com/r/staphb/dragonflye) | | https://github.com/rpetit3/dragonflye | +| [dragonflye](https://hub.docker.com/r/staphb/dragonflye)
[![docker pulls](https://badgen.net/docker/pulls/staphb/dragonflye)](https://hub.docker.com/r/staphb/dragonflye) | | https://github.com/rpetit3/dragonflye | | [Dr. PRG ](https://hub.docker.com/r/staphb/drprg)
[![docker pulls](https://badgen.net/docker/pulls/staphb/drprg)](https://hub.docker.com/r/staphb/drprg) | | https://mbh.sh/drprg/ | | [DSK](https://hub.docker.com/r/staphb/dsk)
[![docker pulls](https://badgen.net/docker/pulls/staphb/dsk)](https://hub.docker.com/r/staphb/dsk) | | https://gatb.inria.fr/software/dsk/ | | [el_gato](https://hub.docker.com/r/staphb/elgato)
[![docker pulls](https://badgen.net/docker/pulls/staphb/elgato)](https://hub.docker.com/r/staphb/elgato) | | https://github.com/appliedbinf/el_gato | diff --git a/dragonflye/1.1.2/Dockerfile b/dragonflye/1.1.2/Dockerfile index b24db7819..273c6ce2f 100644 --- a/dragonflye/1.1.2/Dockerfile +++ b/dragonflye/1.1.2/Dockerfile @@ -6,7 +6,8 @@ USER root WORKDIR / # ARG variables only persist during build time -ARG DRAGONFLYE_VER="1.1.2" +ARG DRAGONFLYE_VER="1.1.2" +ARG POLYPOLISH_VER="0.5.0" # metadata labels LABEL base.image="mambaorg/micromamba:1.4.4" @@ -31,7 +32,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \ apt-get autoclean && rm -rf /var/lib/apt/lists/* # create the conda environment; install dragonflye and dependencies based on bioconda package; cleanup conda garbage -RUN micromamba install -n base -c conda-forge -c bioconda -c defaults -y dragonflye=${DRAGONFLYE_VER} && \ +RUN micromamba install -n base -c conda-forge -c bioconda -c defaults -y dragonflye=${DRAGONFLYE_VER} polypolish=${POLYPOLISH_VER} && \ micromamba clean -a -y && \ mkdir /data diff --git a/dragonflye/1.1.2/README.md b/dragonflye/1.1.2/README.md index cdce66bc8..6b1594921 100644 --- a/dragonflye/1.1.2/README.md +++ b/dragonflye/1.1.2/README.md @@ -1,6 +1,6 @@ # dragonflye docker image -Main tool : [dragonflye v1.1.1](https://github.com/rpetit3/dragonflye) +Main tool : [dragonflye](https://github.com/rpetit3/dragonflye) > dragonflye: Assemble bacterial isolate genomes from Nanopore reads