diff --git a/README.md b/README.md
index 23aa8b187..3186a0d1e 100644
--- a/README.md
+++ b/README.md
@@ -212,7 +212,7 @@ To learn more about the docker pull rate limits and the open source software pro
 | [medaka](https://hub.docker.com/r/staphb/medaka) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/medaka)](https://hub.docker.com/r/staphb/medaka) | <ul><li>[0.8.1](./medaka/0.8.1/)</li><li>[1.0.1](./medaka/1.0.1/)</li><li>[1.2.0](./medaka/1.2.0/)</li><li>[2.0.0](./medaka/2.0.0/)</li><li>[2.0.1](./medaka/2.0.1/)</li></ul> | https://github.com/nanoporetech/medaka |
 | [metaphlan](https://hub.docker.com/r/staphb/metaphlan) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/metaphlan)](https://hub.docker.com/r/staphb/metaphlan) | <ul><li>[3.0.3-no-db (no database)](./metaphlan/3.0.3-no-db/)</li><li> [3.0.3 (~3GB db)](./metaphlan/3.0.3/)</li><li>[4.1.0](./metaphlan/4.1.0/) (no database)</li><li>[4.1.1](./metaphlan/4.1.1/) (no database)</li></ul> | https://github.com/biobakery/MetaPhlAn |
 | [MIDAS](https://hub.docker.com/r/staphb/midas) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/midas)](https://hub.docker.com/r/staphb/midas) | <ul><li>1.3.2 (no database)</li> | https://github.com/snayfach/MIDAS |
-| [minimap2](https://hub.docker.com/r/staphb/minimap2) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/minimap2)](https://hub.docker.com/r/staphb/minimap2) | <ul><li>2.17</li><li>2.18</li><li>2.21</li><li>2.22</li><li>2.23</li><li>2.24</li><li>2.25</li><li>[2.26](./minimap2/2.26)</li><li>[2.27](./minimap2/2.27/)</li>li>[2.28](./minimap2/2.28/)</li></ul> | https://github.com/lh3/minimap2 |
+| [minimap2](https://hub.docker.com/r/staphb/minimap2) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/minimap2)](https://hub.docker.com/r/staphb/minimap2) | <ul><li>2.17</li><li>2.18</li><li>2.21</li><li>2.22</li><li>2.23</li><li>2.24</li><li>2.25</li><li>[2.26](./minimap2/2.26)</li><li>[2.27](./minimap2/2.27/)</li><li>[2.28](./minimap2/2.28/)</li></ul> | https://github.com/lh3/minimap2 |
 | [minipolish](https://hub.docker.com/r/staphb/minipolish) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/minipolish)](https://hub.docker.com/r/staphb/minipolish) | <ul><li>0.1.3</li></ul> | https://github.com/rrwick/Minipolish |
 | [mlst](https://hub.docker.com/r/staphb/mlst) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/mlst)](https://hub.docker.com/r/staphb/mlst) | <ul><li>2.16.2</li><li>2.17.6</li><li>2.19.0</li><li>2.22.0</li><li>2.22.1</li><li>2.23.0</li><li>[2.23.0-2023-07 (databases updated July 2023)](mlst/2.23.0-2023-07/)</li><li>[2.23.0-2023-08 (databases updated Aug 2023)](mlst/2.23.0-2023-08/)</li><li>[2.23.0-2024-01 (databases updated Jan 2024)](mlst/2.23.0-2024-01/)</li><li>[2.23.0-2024-03 (databases updated March 2024)](mlst/2.23.0-2024-03/)</li></ul> | https://github.com/tseemann/mlst |
 | [Mugsy](https://hub.docker.com/r/staphb/mugsy) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/mugsy)](https://hub.docker.com/r/staphb/mugsy) | <ul><li>1r2.3</li></ul> | http://mugsy.sourceforge.net/ |
diff --git a/fastani/1.33-RGDv2/README.md b/fastani/1.33-RGDv2/README.md
index e27a4dbf0..9104ab75a 100644
--- a/fastani/1.33-RGDv2/README.md
+++ b/fastani/1.33-RGDv2/README.md
@@ -6,7 +6,7 @@ Full documentation: https://github.com/ParBLiSS/FastANI
 
 FastANI was developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes.
 
-This docker image contains the Reference Genome Database version 2 (RGDv2) from the Enteric Diseases Laboratory Branch at the CDC. It contains the genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species.
+This docker image contains the Reference Genome Database version 2 (RGDv2) from the Enteric Diseases Laboratory Branch at the CDC. It contains the genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species. Here is the publication describing the database: [https://doi.org/10.3389/fmicb.2023.1225207](https://doi.org/10.3389/fmicb.2023.1225207)
 
 The FASTA files for RGDv2 can be found within `/RGDv2/` inside the docker image.
 
diff --git a/fastani/1.34-RGDV2/README.md b/fastani/1.34-RGDV2/README.md
index e27a4dbf0..9104ab75a 100644
--- a/fastani/1.34-RGDV2/README.md
+++ b/fastani/1.34-RGDV2/README.md
@@ -6,7 +6,7 @@ Full documentation: https://github.com/ParBLiSS/FastANI
 
 FastANI was developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes.
 
-This docker image contains the Reference Genome Database version 2 (RGDv2) from the Enteric Diseases Laboratory Branch at the CDC. It contains the genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species.
+This docker image contains the Reference Genome Database version 2 (RGDv2) from the Enteric Diseases Laboratory Branch at the CDC. It contains the genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species. Here is the publication describing the database: [https://doi.org/10.3389/fmicb.2023.1225207](https://doi.org/10.3389/fmicb.2023.1225207)
 
 The FASTA files for RGDv2 can be found within `/RGDv2/` inside the docker image.
 
diff --git a/mummer/4.0.0-RGDv2/README.md b/mummer/4.0.0-RGDv2/README.md
index ff1c03786..9c09e8a3d 100755
--- a/mummer/4.0.0-RGDv2/README.md
+++ b/mummer/4.0.0-RGDv2/README.md
@@ -1,13 +1,15 @@
 # mummer + RGDv2 container
+
 Main tool : [mummer](https://github.com/mummer4/mummer)
 
 Additional tools:
+
 - `mash` v2.3
 - `ani-m.pl` v0.1 from https://github.com/lskatz/ani-m
 
 MUMmer is a versatile alignment tool for DNA and protein sequences.
 
-This docker image contains the **Reference Genome Database version 2 (RGDv2)** from the Enteric Diseases Laboratory Branch at the CDC. It contains the reference genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species.
+This docker image contains the **Reference Genome Database version 2 (RGDv2)** from the Enteric Diseases Laboratory Branch at the CDC. It contains the reference genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species. Here is the publication describing the database: [https://doi.org/10.3389/fmicb.2023.1225207](https://doi.org/10.3389/fmicb.2023.1225207)
 
 The FASTA files for RGDv2 can be found within the directory `/RGDv2/` inside the docker image.
 
diff --git a/mummer/4.0.0-gnuplot/README.md b/mummer/4.0.0-gnuplot/README.md
index 5e5cbab34..58af5c89c 100755
--- a/mummer/4.0.0-gnuplot/README.md
+++ b/mummer/4.0.0-gnuplot/README.md
@@ -11,7 +11,7 @@ Additional tools:
 
 MUMmer is a versatile alignment tool for DNA and protein sequences.
 
-This docker image contains the **Reference Genome Database version 2 (RGDv2)** from the Enteric Diseases Laboratory Branch at the CDC. It contains the reference genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species.
+This docker image contains the **Reference Genome Database version 2 (RGDv2)** from the Enteric Diseases Laboratory Branch at the CDC. It contains the reference genomes of 43 enteric bacterial isolates that are used to for species identification of bacterial isolate WGS data. This database is NOT meant to be comprehensive - it contains the genomes of enteric pathogens commonly sequenced by EDLB and some closely related species. Here is the publication describing the database: [https://doi.org/10.3389/fmicb.2023.1225207](https://doi.org/10.3389/fmicb.2023.1225207)
 
 The FASTA files for RGDv2 can be found within the directory `/RGDv2/` inside the docker image.
 
diff --git a/vadr/1.6.3-hav-flu2/README.md b/vadr/1.6.3-hav-flu2/README.md
index 4509a072a..18bacf245 100644
--- a/vadr/1.6.3-hav-flu2/README.md
+++ b/vadr/1.6.3-hav-flu2/README.md
@@ -22,6 +22,7 @@ Available VADR models:
 - Dengue virus and other Flaviviridae
 - RSV v1.5.1-2
 - influenza v1.6.3-2
+  - More information on this model can be found in the publication describing the creation, testing, and validation here: [https://doi.org/10.1093/database/baae091](https://doi.org/10.1093/database/baae091)
 
 Additional VADR models: