Main tool: polkapox
Additional tools installed via pip:
- biopython: 1.83
- numpy: 1.24.4
- mkl: 2024.0.0
- networkx: 3.1
- gfapy: 1.2.3 Additional tools installed from pre-compiled binaries:
- Blast+: 2.15.0
polkapox is a nextflow workflow for filtering, trimming, QC, reference-based analysis, and de novo assembly of Illumina sequencing reads from orthopoxviruses. The resultant container is not intended to run independently of the workflow.
Full documentation: https://github.com/CDCgov/polkapox