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bakta container

Main tool: bakta

Code repository: https://github.com/oschwengers/bakta

Basic information on how to use this tool:

  • executable: bakta
  • help: -h
  • version: -v
  • description: Annotates bacterial genomes

Bakta is a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich, sORF-including and taxon-independent annotations in machine-readable JSON & bioinformatics standard file formats for automated downstream analysis.

Additional information:

WARNING : Image does not contain a database.

Full documentation: https://github.com/oschwengers/bakta/

Example Usage

bakta sample.fasta --db <path to database> --threads 20 --prefix sample