type_pipe_2.5-dockerized.sh shuffle reads wildcard bug

[whottel]

In line 314 of type_pipe_2.5-dockerized.sh an * is used that on my end leads to an apparent error with file names that are a substring of another file name (eg. 22 and 220) in that the resulting files for two distinct isolates are identical. Removing the * corrected the issue in my local job script.
Also, (disclaimer: I have not look into this directly) a similar problem may arise in the MASH, Kraken, and SPAdes steps as they appear to also utilize wildcards in a similar way.