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AOCS_137.test2.Somatic.HighConfidenceConsequence.snv.vcf
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AOCS_137.test2.Somatic.HighConfidenceConsequence.snv.vcf
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##fileformat=VCFv4.0
##fileDate=02102013
##FILTER=<ID=File1Only,Description="Variant was called with qSNP">
##FILTER=<ID=File2Only,Description="Variant was called with GATK">
##FILTER=<ID=BothFiles,Description="Variant was called with qSNP and GATK">
##INFO=<ID=GENE,Type=String,Description="Hugo gene annotation">
##INFO=<ID=TYPE,Type=String,Description="Variant classification annotation">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
11 64410260 . T C . File1Only GENE=NRXN2;TYPE=Missense_Mutation GT 0/1
19 344772 . A C . File1Only GENE=MIER2;TYPE=Splice_Site GT 0/1
14 24429214 . T G . File1Only GENE=DHRS4;TYPE=Splice_Site GT 0/1
17 34803439 . G T . File1Only GENE=TBC1D3G;TYPE=Splice_Site GT 0/1
13 25671027 rs78826513 A G . File2Only GENE=PABPC3;TYPE=Missense_Mutation GT 0/1
3 195507445 . T A . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
19 53116988 . G A . File2Only GENE=ZNF83;TYPE=Missense_Mutation GT 1/1
15 22742863 . G A . File2Only GENE=GOLGA6L1;TYPE=Silent GT 0/1
14 105415389 . C T . File2Only GENE=AHNAK2;TYPE=Silent GT 0/1
19 52887973 rs78729874 T C . File2Only GENE=ZNF880;TYPE=Silent GT 0/1
3 195505918 . G T . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
3 195507428 . T A . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
11 6412869 . A C . File2Only GENE=SMPD1;TYPE=Missense_Mutation GT 0/1
3 195505862 . C T . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
11 1093610 . C G . File2Only GENE=MUC2;TYPE=Missense_Mutation GT 0/1
3 195510374 . C T . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
13 25671200 rs76111404 C T . File2Only GENE=PABPC3;TYPE=Silent GT 0/1
M 11583 . T C . File2Only GENE=MT-ND4;TYPE=Missense_Mutation GT 0/1
13 19312548 rs77959098 A G . File2Only GENE=LINC00417;TYPE=Splice_Site GT 0/1
16 33962413 . G C . File2Only GENE=LINC00273;TYPE=Missense_Mutation GT 0/1
19 53770694 . G A . File2Only GENE=VN1R4;TYPE=Silent GT 0/1
13 25671742 rs140135080 G A . File2Only GENE=PABPC3;TYPE=Missense_Mutation GT 0/1
3 195510382 . G T . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
19 55913069 . C T . File2Only GENE=UBE2S;TYPE=Missense_Mutation GT 0/1
19 52887974 . G A . File2Only GENE=ZNF880;TYPE=Missense_Mutation GT 0/1
17 20360881 . A G . File2Only GENE=LGALS9B;TYPE=Splice_Site GT 1/1
7 144364881 . C T . File2Only GENE=TPK1;TYPE=Missense_Mutation GT 0/1
16 33962434 rs74692475 C G . File2Only GENE=LINC00273;TYPE=Missense_Mutation GT 0/1
13 25671206 rs76614854 A G . File2Only GENE=PABPC3;TYPE=Silent GT 0/1
5 125929037 . T A . File2Only GENE=ALDH7A1;TYPE=Splice_Site GT 0/1
7 152513619 . G A . File2Only GENE=ACTR3B;TYPE=Silent GT 0/1
3 195514633 . A G . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 1/1
1 236924401 . G A . File2Only GENE=ACTN2;TYPE=Missense_Mutation GT 0/1
1 236924398 . C G . File2Only GENE=ACTN2;TYPE=Missense_Mutation GT 0/1
16 33962432 . C T . File2Only GENE=LINC00273;TYPE=Silent GT 0/1
3 195510373 . T C . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
16 33962421 . G A . File2Only GENE=LINC00273;TYPE=Missense_Mutation GT 0/1
6 13814307 . C G . File2Only GENE=CCDC90A;TYPE=Missense_Mutation GT 0/1
1 236924396 . T A . File2Only GENE=ACTN2;TYPE=Missense_Mutation GT 0/1
3 195510371 . T G . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
1 26228179 . A C . BothFiles GENE=STMN1;TYPE=Splice_Site GT 0/1
10 134999764 . G C . BothFiles GENE=KNDC1;TYPE=Missense_Mutation GT 0/1
2 201873712 . A C . BothFiles GENE=FAM126B;TYPE=Missense_Mutation GT 1/1
2 30829044 . A G . BothFiles GENE=LCLAT1;TYPE=Missense_Mutation GT 0/1
1 222712048 . G A . BothFiles GENE=HHIPL2;TYPE=Missense_Mutation GT 0/1
X 100076581 . G A . BothFiles GENE=CSTF2;TYPE=Missense_Mutation GT 0/1
4 103553360 . C A . BothFiles GENE=MANBA;TYPE=Missense_Mutation GT 1/1
7 73636019 . G C . BothFiles GENE=LAT2;TYPE=Missense_Mutation GT 0/1
10 105344705 . G A . BothFiles GENE=NEURL;TYPE=Silent GT 0/1
4 159138498 . C T . BothFiles GENE=TMEM144;TYPE=Silent GT 1/1
22 23922252 . T C . BothFiles GENE=IGLL1;TYPE=Silent GT 0/1
4 7056693 . G A . BothFiles GENE=TADA2B;TYPE=Missense_Mutation GT 0/1
1 41007354 . G A . BothFiles GENE=ZNF684;TYPE=Silent GT 0/1
5 176396598 . A T . BothFiles GENE=UIMC1;TYPE=Splice_Site GT 0/1
6 116757383 . G T . BothFiles GENE=DSE;TYPE=Silent GT 0/1
2 54893128 . G A . BothFiles GENE=SPTBN1;TYPE=Missense_Mutation GT 0/1
17 7578406 rs28934578 C T . BothFiles GENE=TP53;TYPE=Missense_Mutation GT 1/1
15 75135396 . G A . BothFiles GENE=ULK3;TYPE=Silent GT 0/1
4 5743472 . C T . BothFiles GENE=EVC;TYPE=Silent GT 0/1
6 32713648 . A G . BothFiles GENE=HLA-DQA2;TYPE=Missense_Mutation GT 0/1
16 81388253 . C A . BothFiles GENE=GAN;TYPE=Missense_Mutation GT 1/1
20 52198221 . T C . BothFiles GENE=ZNF217;TYPE=Missense_Mutation GT 0/1
20 17623649 . C A . BothFiles GENE=RRBP1;TYPE=Missense_Mutation GT 0/1
2 21250857 . T G . BothFiles GENE=APOB;TYPE=Missense_Mutation GT 0/1
6 110423296 . T A . BothFiles GENE=WASF1;TYPE=Silent GT 0/1
11 70221071 . A G . BothFiles GENE=PPFIA1;TYPE=Missense_Mutation GT 0/1
13 51918596 . C T . BothFiles GENE=SERPINE3;TYPE=Silent GT 1/1
5 179994859 rs142504544 G C . BothFiles GENE=CNOT6;TYPE=Missense_Mutation GT 0/1
5 52096463 . T A . BothFiles GENE=PELO;TYPE=Missense_Mutation GT 0/1
1 16958018 . C T . BothFiles GENE=CROCCP2;TYPE=Splice_Site GT 0/1
3 42615042 . G A . BothFiles GENE=SEC22C;TYPE=Splice_Site GT 1/1
12 994322 . T G . BothFiles GENE=WNK1;TYPE=Missense_Mutation GT 0/1
7 100677806 . C A . BothFiles GENE=MUC17;TYPE=Missense_Mutation GT 0/1
6 49700967 . A C . BothFiles GENE=CRISP3;TYPE=Missense_Mutation GT 0/1
1 23419430 . T A . BothFiles GENE=LUZP1;TYPE=Missense_Mutation GT 0/1
6 165806227 . C T . BothFiles GENE=PDE10A;TYPE=Missense_Mutation GT 0/1
9 133491901 . G A . BothFiles GENE=FUBP3;TYPE=Silent GT 1/1
17 79207517 . C G . BothFiles GENE=ENTHD2;TYPE=Splice_Site GT 0/1
5 140711740 . C T . BothFiles GENE=PCDHGA1;TYPE=Nonsense_Mutation GT 0/1
19 37853888 . T C . BothFiles GENE=HKR1;TYPE=Silent GT 0/1
6 46827068 . T A . BothFiles GENE=GPR116;TYPE=Missense_Mutation GT 0/1
9 35957815 . G A . BothFiles GENE=OR2S2;TYPE=Missense_Mutation GT 0/1
2 191900904 . G A . BothFiles GENE=STAT4;TYPE=Missense_Mutation GT 1/1
15 77908204 . C T . BothFiles GENE=LINGO1;TYPE=Missense_Mutation GT 0/1
19 16870182 . G A . BothFiles GENE=NWD1;TYPE=Missense_Mutation GT 0/1
22 39777730 . G A . BothFiles GENE=SYNGR1;TYPE=Silent GT 0/1
5 145317798 . A G . BothFiles GENE=SH3RF2;TYPE=Missense_Mutation GT 0/1
5 24487987 . G T . BothFiles GENE=CDH10;TYPE=Missense_Mutation GT 0/1
3 185161289 . G C . BothFiles GENE=MAP3K13;TYPE=Missense_Mutation GT 0/1
6 90457087 . C T . BothFiles GENE=MDN1;TYPE=Missense_Mutation GT 0/1
2 174829886 . T C . BothFiles GENE=SP3;TYPE=Splice_Site GT 0/1
12 76796519 . C G . BothFiles GENE=OSBPL8;TYPE=Missense_Mutation GT 0/1
13 77754394 . G C . BothFiles GENE=MYCBP2;TYPE=Silent GT 1/1
2 103120064 . G A . BothFiles GENE=SLC9A4;TYPE=Missense_Mutation GT 0/1
6 117248511 . C G . BothFiles GENE=RFX6;TYPE=Nonsense_Mutation GT 0/1
7 150490309 . G A . BothFiles GENE=TMEM176B;TYPE=Missense_Mutation GT 0/1
9 104152897 . G T . BothFiles GENE=MRPL50;TYPE=Missense_Mutation GT 0/1
7 47847979 . C T . BothFiles GENE=PKD1L1;TYPE=Missense_Mutation GT 0/1
16 2156686 . C T . BothFiles GENE=PKD1;TYPE=Splice_Site GT 0/1
7 92148397 . A T . BothFiles GENE=PEX1;TYPE=Splice_Site GT 0/1
14 24542134 . C T . BothFiles GENE=CPNE6;TYPE=Splice_Site GT 0/1
X 69424259 . A G . BothFiles GENE=DGAT2L6;TYPE=Missense_Mutation GT 0/1
20 17581649 . A C . BothFiles GENE=DSTN;TYPE=Missense_Mutation GT 0/1
16 2647740 . A C . BothFiles GENE=PDPK1;TYPE=Missense_Mutation GT 0/1
2 46608857 . G A . BothFiles GENE=EPAS1;TYPE=Missense_Mutation GT 0/1
12 81004232 . A G . BothFiles GENE=PTPRQ;TYPE=Silent GT 0/1
6 117215217 . G A . BothFiles GENE=RFX6;TYPE=Missense_Mutation GT 0/1
3 89259356 . A G . BothFiles GENE=EPHA3;TYPE=Missense_Mutation GT 0/1
5 33596112 . C A . BothFiles GENE=ADAMTS12;TYPE=Missense_Mutation GT 0/1
3 170011171 . G T . BothFiles GENE=PRKCI;TYPE=Splice_Site GT 0/1
X 152686895 . G A . BothFiles GENE=ZFP92;TYPE=Missense_Mutation GT 0/1
22 36712573 . C T . BothFiles GENE=MYH9;TYPE=Missense_Mutation GT 0/1
11 55761684 . C T . BothFiles GENE=OR5F1;TYPE=Missense_Mutation GT 0/1
3 197428651 . T C . BothFiles GENE=KIAA0226;TYPE=Missense_Mutation GT 0/1
9 126125150 . T A . BothFiles GENE=CRB2;TYPE=Missense_Mutation GT 0/1
6 138892993 . A C . BothFiles GENE=NHSL1;TYPE=Missense_Mutation GT 0/1
9 129977053 . G C . BothFiles GENE=RALGPS1;TYPE=Missense_Mutation GT 1/1
1 151773586 . A T . BothFiles GENE=LINGO4;TYPE=Missense_Mutation GT 0/1
17 60827810 . G C . BothFiles GENE=MARCH10;TYPE=Missense_Mutation GT 0/1
19 19774218 . G C . BothFiles GENE=ATP13A1;TYPE=Missense_Mutation GT 0/1
1 44877823 . C A . BothFiles GENE=RNF220;TYPE=Missense_Mutation GT 0/1
2 38179238 . A G . BothFiles GENE=FAM82A1;TYPE=Missense_Mutation GT 0/1
9 140069436 . G T . BothFiles GENE=ANAPC2;TYPE=Silent GT 1/1
11 123598238 . T A . BothFiles GENE=ZNF202;TYPE=Missense_Mutation GT 0/1
3 123819381 . C T . BothFiles GENE=KALRN;TYPE=Splice_Site GT 0/1
6 31612738 . G C . BothFiles GENE=BAG6;TYPE=Missense_Mutation GT 0/1
10 69669050 . C G . BothFiles GENE=SIRT1;TYPE=Missense_Mutation GT 0/1
10 64136152 . C A . BothFiles GENE=ZNF365;TYPE=Missense_Mutation GT 0/1
11 4936858 . G C . BothFiles GENE=OR51G2;TYPE=Missense_Mutation GT 1/1
6 159465170 . C A . BothFiles GENE=TAGAP;TYPE=Silent GT 0/1
22 31011359 . C T . BothFiles GENE=TCN2;TYPE=Missense_Mutation GT 0/1
3 121421378 . C G . BothFiles GENE=GOLGB1;TYPE=Missense_Mutation GT 0/1
19 4217356 . G C . BothFiles GENE=ANKRD24;TYPE=Missense_Mutation GT 1/1
12 132516510 . A T . BothFiles GENE=EP400;TYPE=Missense_Mutation GT 0/1
7 129394854 . C T . BothFiles GENE=NRF1;TYPE=Splice_Site GT 0/1
19 843459 . A G . BothFiles GENE=PRTN3;TYPE=Splice_Site GT 1/1
2 26204756 . G C . BothFiles GENE=KIF3C;TYPE=Missense_Mutation GT 0/1
X 103034777 . C T . BothFiles GENE=PLP1;TYPE=Splice_Site GT 0/1
17 48155449 . C T . BothFiles GENE=ITGA3;TYPE=Silent GT 1/1
10 25314051 . T C . BothFiles GENE=THNSL1;TYPE=Silent GT 0/1
16 476412 . A T . BothFiles GENE=RAB11FIP3;TYPE=Missense_Mutation GT 0/1
18 77132860 . G T . BothFiles GENE=ATP9B;TYPE=Missense_Mutation GT 1/1
13 39952602 . C T . BothFiles GENE=LHFP;TYPE=Silent GT 0/1
9 37518174 . A T . BothFiles GENE=FBXO10;TYPE=Missense_Mutation GT 0/1
19 12865543 . C A . BothFiles GENE=BEST2;TYPE=Missense_Mutation GT 0/1
19 36577676 . A G . BothFiles GENE=WDR62;TYPE=Missense_Mutation GT 0/1
1 43905389 . G C . BothFiles GENE=SZT2;TYPE=Missense_Mutation GT 0/1
11 20178098 . G T . BothFiles GENE=DBX1;TYPE=Silent GT 0/1
19 42392332 . G C . BothFiles GENE=ARHGEF1;TYPE=Missense_Mutation GT 0/1
3 130282059 . A T . BothFiles GENE=COL6A6;TYPE=Missense_Mutation GT 0/1
1 228554140 . C G . BothFiles GENE=OBSCN;TYPE=Missense_Mutation GT 0/1
10 50025348 . A G . BothFiles GENE=WDFY4;TYPE=Missense_Mutation GT 0/1
3 98312282 . C G . BothFiles GENE=CPOX;TYPE=Missense_Mutation GT 0/1
22 45221445 . A C . BothFiles GENE=PRR5-ARHGAP8;TYPE=Missense_Mutation GT 1/1
5 110062328 . C T . BothFiles GENE=TMEM232;TYPE=Splice_Site GT 1/1
X 152034445 . C T . BothFiles GENE=NSDHL;TYPE=Missense_Mutation GT 0/1
1 248487771 . T A . BothFiles GENE=OR2M7;TYPE=Missense_Mutation GT 0/1
5 174152015 . A T . BothFiles GENE=MSX2;TYPE=Missense_Mutation GT 1/1
6 72974728 . A C . BothFiles GENE=RIMS1;TYPE=Missense_Mutation GT 0/1
5 52096464 . G T . BothFiles GENE=PELO;TYPE=Missense_Mutation GT 0/1
7 48046851 . C G . BothFiles GENE=SUN3;TYPE=Missense_Mutation GT 0/1
17 80367239 . C G . BothFiles GENE=OGFOD3;TYPE=Splice_Site GT 0/1
8 131129235 . G T . BothFiles GENE=ASAP1;TYPE=Missense_Mutation GT 0/1
6 144835135 . G A . BothFiles GENE=UTRN;TYPE=Missense_Mutation GT 0/1
X 22291870 . A G . BothFiles GENE=ZNF645;TYPE=Silent GT 1/1
5 139745486 . G A . BothFiles GENE=SLC4A9;TYPE=Missense_Mutation GT 0/1
2 241715324 . G C . BothFiles GENE=KIF1A;TYPE=Missense_Mutation GT 0/1
19 18576712 . T C . BothFiles GENE=ELL;TYPE=Missense_Mutation GT 0/1