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CHANGELOG.md

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Changelog

Version 0.4.0

  • Switch to using pybind11 for the Python/C++ interface.
  • Update to the latest singlepp C++ library.
  • Store marker lists as lists of StringList objects in the metadata of the BiocFrame objects.
  • Automatically remove None labels in the reference.
  • Automatically remove duplicated feature names in the reference.
  • Remove the ref_names= option in train_integrated() for simplicity.
  • Remove support for auto-loading of references based on their names; users should extract references from celldex instead.
  • Deprecate options to extract features/labels from a SummarizedExperiment based on the column name; users should explicitly pass the column contents to each function.

Version 0.3.0

Compatibility with NumPy 2.0

Version 0.2.0

Migrate references to the celldex package.

Version 0.1.1

  • Support SummarizedExperiment inputs consistently in all functions.

Version 0.1.0

  • Added the annotate_integrated() function, which performs annotation across multiple references.