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Failed to collect lazy table. #26

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JiyuanZheng opened this issue May 13, 2024 · 2 comments
Open

Failed to collect lazy table. #26

JiyuanZheng opened this issue May 13, 2024 · 2 comments

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@JiyuanZheng
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refdata <- celldex::HumanPrimaryCellAtlasData()
Error in collect():
! Failed to collect lazy table.
Caused by error in db_collect():
! Arguments in ... must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?
Run rlang::last_trace() to see where the error occurred.

@LTLA
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LTLA commented May 13, 2024

This seems like an error from one of our dependencies, probably ExperimentHub. If I had to guess, their SQLite file got corrupted. If this is the case, I don't know how to fix other than just deleting your cache.

Note that the latest version of celldex doesn't use ExperimentHub at all, so if you upgrade to 1.14.0, the problem should go away.

@mailmrcai
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I got the same error.
I fixed it by update dbplyr
install.packages("devtools")
devtools::install_version("dbplyr", version = "2.3.4")
then check the version of devtools, ensuring the version is 2.3.4 Then reopen the R or R studio, redo your interest code.
Note: you need to quit the R or R sudio, then reopen it and update dbplyr by

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