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Dear @ShixiangWang ,
在运行sigflow时,遇到了一个报错信息:
查询得知,一般该报错来自于使用了错误的参考基因组,导致坐标出界。例如: PoisonAlien/maftools#85
但是我仔细检查了使用的基因组,确认bwa比对和sigflow使用的都是hg19,且报错的这一行row 120798的坐标信息确实位于基因组内。
根据 https://www.genome.ucsc.edu/goldenpath/help/hg19.chrom.sizes: chr15 size = 102531392 row 120798是
请问您有什么线索可以让我找出错误所在吗? 谢谢
The text was updated successfully, but these errors were encountered:
更新一些信息:
目前已经定位,报错位于sig_tally()函数。将chrM染色体的变异移除后,程序可以成功运行。 仔细检查了下,未发现chrM上有变异的位点大于chrM的染色体size。希望这些信息能有帮助。
sig_tally()
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@b-niu 谢谢report。这个可能是基因组版本不完全兼容造成的。
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Dear @ShixiangWang ,
在运行sigflow时,遇到了一个报错信息:
查询得知,一般该报错来自于使用了错误的参考基因组,导致坐标出界。例如:
PoisonAlien/maftools#85
但是我仔细检查了使用的基因组,确认bwa比对和sigflow使用的都是hg19,且报错的这一行row 120798的坐标信息确实位于基因组内。
根据 https://www.genome.ucsc.edu/goldenpath/help/hg19.chrom.sizes:
chr15 size = 102531392
row 120798是
请问您有什么线索可以让我找出错误所在吗?
谢谢
The text was updated successfully, but these errors were encountered: