From a6eab896133d2b95c5a40ef13cae4e2a5a71c04e Mon Sep 17 00:00:00 2001 From: Sebastian Date: Tue, 18 Apr 2023 11:40:19 +0200 Subject: [PATCH] Updating dependencies --- poetry.lock | 5086 +++++++++++++++++++++++++----------------------- pyproject.toml | 30 +- 2 files changed, 2639 insertions(+), 2477 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1118a99d..9ee467f4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,24 +1,33 @@ +# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. + [[package]] name = "absl-py" -version = "1.3.0" +version = "1.4.0" description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." category = "main" optional = false python-versions = ">=3.6" +files = [ + {file = "absl-py-1.4.0.tar.gz", hash = "sha256:d2c244d01048ba476e7c080bd2c6df5e141d211de80223460d5b3b8a2a58433d"}, + {file = "absl_py-1.4.0-py3-none-any.whl", hash = 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conflicts with tensorboard writer +python = ">=3.9,<3.10" + +biopython = ">=1.81,<2.0" +matplotlib = ">=3.7.1,<4.0.0" +h5py = ">=3.8.0,<4.0.0" +numpy = "1.23.5" # Latest version (1.24.2) incompatible with numba +plotly = ">=5.14.1,<6.0.0" +protobuf = "^4.22.3" # Latest version (4.21.1) conflicts with tensorboard writer pyyaml = "6.0" "ruamel.yaml" = ">=0.17.10,<0.18.0" -scipy = ">=1.4.1,<2.0.0" -tensorboard = "^2.11.0" -torch = "^1.13.0" -tqdm = ">=4.45.0,<5.0.0" -torchmetrics = "^0.11.0" +scipy = ">=1.10.1,<2.0.0" +tensorboard = "^2.12.2" +torch = "^2.0.0" +tqdm = ">=4.65.0,<5.0.0" +torchmetrics = "^0.11.4" # Optional bio-embeddings = { git = "https://github.com/SebieF/bio_embeddings.git", branch = "biotrainer-compatible", optional = true, extras = ["all"] } jupyter = { version = "^1.0.0", optional = true } [tool.poetry.dev-dependencies] -pytest = "7.2.0" +pytest = "7.3.1" [tool.poetry.extras] bio-embeddings = ["bio-embeddings"]