forked from sacdallago/biotrainer
-
Notifications
You must be signed in to change notification settings - Fork 0
/
pyproject.toml
61 lines (55 loc) · 1.71 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
[tool.poetry]
name = "biotrainer"
version = "0.9.1"
description = "Biotrainers for embeddings"
authors = [
"Christian Dallago <[email protected]>",
"Sebastian Franz <[email protected]>",
"Joaquin Gomez Sanchez <[email protected]>",
"Michael Heinzinger <[email protected]>"
]
license = "AFL v3.0"
readme = "README.md"
classifiers = [
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"License :: OSI Approved :: AFL License",
"Operating System :: OS Independent",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Visualization"
]
[tool.poetry.scripts]
biotrainer = 'biotrainer.utilities.cli:main'
[tool.poetry.urls]
issues = "https://github.com/sacdallago/biotrainer/issues"
repository = "https://github.com/sacdallago/biotrainer"
[tool.poetry.dependencies]
python = ">=3.9,<3.12"
accelerate = "^0.32.1"
biopython = ">=1.83,<2.0"
matplotlib = ">=3.7.2,<4.0.0"
h5py = ">=3.8.0,<4.0.0"
numpy = "1.26.4"
pip-audit = "^2.7.3"
plotly = ">=5.16.1,<6.0.0"
protobuf = "^5.27.0"
pyyaml = "6.0.1"
"ruamel.yaml" = ">=0.17.40,<0.18.0"
sentencepiece = "^0.2.0"
scipy = ">=1.11.2,<2.0.0"
scikit-learn = "^1.5.1"
tensorboard = "^2.16.2" # Latest version 2.17.0 conflicts with latest version of protobuf
torch = "2.3.1"
tqdm = "^4.66.4"
transformers = "^4.41.2"
torchmetrics = "^1.3.2"
safetensors = "^0.4.3"
[tool.poetry.dev-dependencies]
pytest = "8.2.2"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"