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[IBCDPE-789] Adds network GX Suite #141

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merged 3 commits into from
Jul 17, 2024
Merged

[IBCDPE-789] Adds network GX Suite #141

merged 3 commits into from
Jul 17, 2024

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BWMac
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@BWMac BWMac commented Jul 17, 2024

Description:

This PR implements a GX expectation suite for the network dataset.

I used the rules here and here as reference.

One thing to note is the the rules linked above include expectations that the geneA_external_gene_name and geneB_external_gene_name fields are never null, but I found that in 0.09% and 0.06% of cases, respectively, that is not the case. I have allowed for this for now by including mostly=0.99 meaning that they must not be null at least 99% of the time.

An example report file can be viewed here.

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sonarcloud bot commented Jul 17, 2024

@BWMac BWMac marked this pull request as ready for review July 17, 2024 17:25
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@JessterB JessterB left a comment

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Looks good!

@BWMac BWMac merged commit 0cd930c into dev Jul 17, 2024
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@BWMac BWMac deleted the bwmac/IBCDPE-789/network_gx branch July 17, 2024 19:33
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2 participants