From b5cb37eb832d8e91eb365544e9d2d286eea641ac Mon Sep 17 00:00:00 2001 From: Jessica Britton Date: Mon, 22 Aug 2022 16:33:23 -0700 Subject: [PATCH] Import TMT proteomics --- import-data.sh | 1 + 1 file changed, 1 insertion(+) diff --git a/import-data.sh b/import-data.sh index c86cffe..b59ebc3 100755 --- a/import-data.sh +++ b/import-data.sh @@ -60,6 +60,7 @@ mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabas mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection genesoverallscores --jsonArray --drop --file $DATA_DIR/overall_scores.json mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection rnaboxdistribution --jsonArray --drop --file $DATA_DIR/rna_distribution_data.json mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection proteomicsboxdistribution --jsonArray --drop --file $DATA_DIR/proteomics_distribution_data.json +mongoimport -h $DB_HOST -d agora -u $DB_USER -p $DB_PASS --authenticationDatabase admin --collection proteomicstmt --jsonArray --drop --file $DATA_DIR/proteomics_tmt.json mongo --host $DB_HOST -u $DB_USER -p $DB_PASS --authenticationDatabase admin $WORKING_DIR/create-indexes.js