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Add quality check for content of fastq files to identify corrupted files #49

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jaybee84 opened this issue Sep 26, 2023 · 1 comment

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@jaybee84
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Fastq files with file extensions fastq.gz can be corrupted in multiple ways:

  1. not true gzipped file
  2. content of file is corrupted

It would be great to flag these files at the time of upload or shortly after to make sure ingested files are truly reusable.

@thomasyu888
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thomasyu888 commented Sep 26, 2023

Thanks @jaybee84 for reporting this! I will be porting this into a Jira ticket if there isn't one already for this.

https://sagebionetworks.jira.com/browse/ORCA-278

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