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@SUwonglab

The WH Wong lab at Stanford

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  1. CausalEGM CausalEGM Public

    A General Causal Inference Framework by Encoding Generative Modeling

    Python 67 10

  2. PECA PECA Public

    PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

    MATLAB 42 6

  3. arcsv arcsv Public

    Complex structural variant detection from WGS data

    Python 25 7

  4. scABC scABC Public

    HTML 19 5

  5. rss-net rss-net Public

    RSS-NET: Regression with Summary Statistics exploiting Network Topology

    R 18 4

  6. CoupledNMF CoupledNMF Public

    Coupled clustering of single cell genomic data

    Python 12 1

Repositories

Showing 10 of 25 repositories
  • BayesGM Public

    A Bayesian approach for generative modeling of high-dimensional data

    SUwonglab/BayesGM’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 28, 2024
  • AD-genomicLLM Public

    Associating genotype to imaging and clinical phenotypes of Alzheimer’s disease by leveraging genomic large language model

    SUwonglab/AD-genomicLLM’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 25, 2024
  • cRegulon Public

    cRegulon is an optimization model to identify combinatorial regulon from single cell expression and chromatin accessibility data.

    SUwonglab/cRegulon’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Oct 18, 2024
  • rss-net Public

    RSS-NET: Regression with Summary Statistics exploiting Network Topology

    SUwonglab/rss-net’s past year of commit activity
    R 18 MIT 4 0 0 Updated Sep 16, 2024
  • carrier-stat Public Forked from ghm17/carrier-stat

    Carrier statistic is a statistical framework to prioritize disease-related rare variants by integrating gene expression data

    SUwonglab/carrier-stat’s past year of commit activity
    R 3 MIT 1 0 0 Updated Aug 4, 2024
  • arcsv Public

    Complex structural variant detection from WGS data

    SUwonglab/arcsv’s past year of commit activity
    Python 25 MIT 7 2 0 Updated Jun 24, 2024
  • CausalEGM Public

    A General Causal Inference Framework by Encoding Generative Modeling

    SUwonglab/CausalEGM’s past year of commit activity
    Python 67 10 1 1 Updated Jun 1, 2024
  • m2h-ele Public

    Sequence-conserved Enhancer-like Elements

    SUwonglab/m2h-ele’s past year of commit activity
    Shell 4 MIT 0 0 0 Updated Jan 2, 2024
  • TimeReg Public

    time course regulatory analysis from paired gene expression and chromatin accessibility time course data

    SUwonglab/TimeReg’s past year of commit activity
    MATLAB 10 0 4 0 Updated Nov 10, 2023
  • Epi-PRS Public

    Polygenic prediction by leveraging genomic large language models

    SUwonglab/Epi-PRS’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 26, 2023
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