Better warning message

SACGF · Dec 9, 2024 · e7d4d16 · e7d4d16
1 parent 9ec34d6
commit e7d4d16
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/upload/tasks/vcf/genotype_vcf_tasks.py b/upload/tasks/vcf/genotype_vcf_tasks.py
@@ -124,7 +124,7 @@ def process_items(self, upload_step):
         calculate_vcf_stats(vcf.pk, annotation_version.pk)
 
         if vcf_annotation_stats := VCFAnnotationStats.objects.filter(vcf=vcf, vep_skipped_count__gt=0).first():
-            message_string = f"Variant Effect Predictor (VEP) was unable to annotate {vcf_annotation_stats.vep_skipped_count} variants."
+            message_string = f"CalculateVCFStats may not be accurate as VEP was unable to annotate {vcf_annotation_stats.vep_skipped_count} variants."
             SimpleVCFImportInfo.objects.create(type=SimpleVCFImportInfo.ANNOTATION_SKIPPED, has_more_details=True,
                                                upload_step=upload_step, message_string=message_string)