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bk_ondex.owl
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<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:bka="http://knetminer.org/data/rdf/terms/biokno/attributes/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:bkev="http://knetminer.org/data/rdf/terms/biokno/evidences/"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:schema="http://schema.org/"
xmlns:bkds="http://knetminer.org/data/rdf/terms/biokno/dataSources/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:bk="http://knetminer.org/data/rdf/terms/biokno/"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xml:base="http://knetminer.org/data/rdf/terms/biokno/knetminer_extensions/">
<owl:Ontology rdf:about="http://knetminer.org/data/rdf/terms/biokno/knetminer_extensions/">
<owl:imports rdf:resource="http://knetminer.org/data/rdf/terms/biokno/"/>
</owl:Ontology>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/FeatureContainer">
<rdfs:label xml:lang="en">FeatureContainer</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">These concepts serve containers for other nucleotide sequence features</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>FeatureContainer</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/CDS">
<rdfs:label xml:lang="en">Coding Sequence</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">The coding region of a gene is that portion of a gene's DNA or RNA, composed of exons, that codes for protein.</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>CDS</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/CoExpStudy">
<rdfs:label xml:lang="en">Co-Expression Study</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A co-expression study, like identification of co-expressed genes under certain conditions, eg, PMID:30115782.</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MicroArrayExperiment"/>
</rdfs:subClassOf>
<terms:identifier>CoExpStudy</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/RRNAGene">
<rdfs:label xml:lang="en">rRNA-Gene</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NcRNAGene"/>
</rdfs:subClassOf>
<terms:identifier>RRNAGene</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/TFBS">
<rdfs:label xml:lang="en">Transcription factor binding site</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A sequence where a transcription factor binds to the DNA</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>TFBS</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/SequenceFeature">
<rdfs:label xml:lang="en">Sequence Feature</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>SequenceFeature</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/ARSCons">
<rdfs:label xml:lang="en">ARS-Consensus</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>ARSCons</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/CellularComponent">
<rdfs:label xml:lang="en">Cellular_Component</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Cellular Component (GO)</terms:description>
<owl:equivalentClass>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/CelComp"/>
</owl:equivalentClass>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GeneOntologyTerms"/>
</rdfs:subClassOf>
<terms:identifier>CellularComponent</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MeshSubstance">
<rdfs:label xml:lang="en">MeSH Substance</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A substance from MeSH</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MeshTerm"/>
</rdfs:subClassOf>
<terms:identifier>MeshSubstance</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/ncRNA">
<rdfs:label xml:lang="en">ncRNA</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/RNA"/>
</rdfs:subClassOf>
<terms:identifier>ncRNA</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/ProcessSequence">
<rdfs:label xml:lang="en">ProcessSequence</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>ProcessSequence</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Polypeptide">
<rdfs:label xml:lang="en">Polypeptide</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A polymer of aminoacids.</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/InfoPolymer"/>
</rdfs:subClassOf>
<terms:identifier>Polypeptide</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/OntologyTerms">
<rdfs:label xml:lang="en">OntologyTerms</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>OntologyTerms</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Protcmplx">
<rdfs:label xml:lang="en">Protein complex</rdfs:label>
<terms:description xml:lang="en">Protein Complex consists of several subunits</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Protein"/>
</rdfs:subClassOf>
<terms:identifier>Protcmplx</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Sequence">
<rdfs:label xml:lang="en">Sequence</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>Sequence</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GISGD">
<rdfs:label xml:lang="en">Synthetic Growth Defect</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GenInt"/>
</rdfs:subClassOf>
<terms:identifier>GISGD</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Transport">
<rdfs:label xml:lang="en">Transport</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Process"/>
</rdfs:subClassOf>
<terms:identifier>Transport</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/TO">
<rdfs:label xml:lang="en">Trait Ontology</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">ontology describing the different Traits which can affect plants (TO)</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/OntologyTerms"/>
<terms:identifier>TO</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/sDNA">
<rdfs:label xml:lang="en">ssDNA</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Single stranded deoxyribonucleic acid</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/DNA"/>
</rdfs:subClassOf>
<terms:identifier>sDNA</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Gene">
<rdfs:label xml:lang="en">Gene</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Gene</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>Gene</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/PO_PlantStructure">
<rdfs:label xml:lang="en">Plant Structure (PO)</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">The controlled vocabulary of plant structures representing organs, tissue and cell types. Examples are stamen, gynoecium, petal, parenchyma, guard cell, etc</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/PlantOntologyTerms"/>
</rdfs:subClassOf>
<terms:identifier>PO_PlantStructure</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/CDEII">
<rdfs:label xml:lang="en">CDEII</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/CentromereSubFeature"/>
</rdfs:subClassOf>
<terms:identifier>CDEII</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/StrucProt">
<rdfs:label xml:lang="en">Structural Protein</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A protein that serves structural purposes.</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Protein"/>
</rdfs:subClassOf>
<terms:identifier>StrucProt</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Polynucleotide">
<rdfs:label xml:lang="en">Polynucleotide</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A polymer of nucleotides</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/InfoPolymer"/>
</rdfs:subClassOf>
<terms:identifier>Polynucleotide</terms:identifier>
</owl:Class>
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<terms:identifier>Pseudogene</terms:identifier>
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<terms:description xml:lang="en">The relatively small less than 600 nucleotide sequence segment from the 3' end of the consensus or the exemplar sequence; used to design the probes for any given probe set.</terms:description>
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<terms:description xml:lang="en">Ribonucleic Acid. A polymer of riboses with pyrimidine and purine bases.</terms:description>
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<terms:description xml:lang="en">A molecular biological entity that can participate in a Process or in an Interaction.</terms:description>
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<terms:identifier>TelomericRepeat</terms:identifier>
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<terms:description xml:lang="en">series of chemical reactions occurring within a cell.</terms:description>
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<terms:identifier>ProteinComplex</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MoleculeComplex">
<rdfs:label xml:lang="en">Molecule Complex</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">An entity comprised of one or more molecules</terms:description>
<owl:equivalentClass>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MolCmplx"/>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Participant"/>
<terms:identifier>MoleculeComplex</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NonTranscribedRegion">
<rdfs:label xml:lang="en">NonTranscribedRegion</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>NonTranscribedRegion</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Organism">
<rdfs:label xml:lang="en">Organism</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Organism.</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Taxon"/>
</rdfs:subClassOf>
<terms:identifier>Organism</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/YRegion">
<rdfs:label xml:lang="en">YRegion</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MatingLocusSubFeature"/>
</rdfs:subClassOf>
<terms:identifier>YRegion</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MultiGeneLocus">
<rdfs:label xml:lang="en">MultiGeneLocus</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>MultiGeneLocus</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/PhysInt">
<rdfs:label xml:lang="en">Physical Interaction</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Interaction"/>
</rdfs:subClassOf>
<terms:identifier>PhysInt</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/ProtDomain">
<rdfs:label xml:lang="en">Protein Domain</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A Protein domain</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/PolypeptideFeature"/>
<terms:identifier>ProtDomain</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MeshSemanticType">
<rdfs:label xml:lang="en">MeSH Semantic Type</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A semantic type from MeSH</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MeshTerm"/>
</rdfs:subClassOf>
<terms:identifier>MeshSemanticType</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Enzyme">
<rdfs:label xml:lang="en">Enzyme</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">An Enzyme is a Protein that catalyzes a chemical reaction.</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Protein"/>
</rdfs:subClassOf>
<terms:identifier>Enzyme</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/PlantOntologyTerms">
<rdfs:label xml:lang="en">PlantOntologyTerms</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/OntologyTerms"/>
<terms:identifier>PlantOntologyTerms</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/ProtFam">
<rdfs:label xml:lang="en">Protein Family</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Proteins which share a common family</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Annotation"/>
</rdfs:subClassOf>
<terms:identifier>ProtFam</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Retrotransposon">
<rdfs:label xml:lang="en">Retrotransposon</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>Retrotransposon</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/SNRNAGene">
<rdfs:label xml:lang="en">snRNA-Gene</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NcRNAGene"/>
</rdfs:subClassOf>
<terms:identifier>SNRNAGene</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/KOEN">
<rdfs:label xml:lang="en">Kegg Orthologs Enzyme</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Kegg Ortholog Group of sequence similarity</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/KO"/>
<terms:identifier>KOEN</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Path">
<rdfs:label xml:lang="en">Pathway</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Biological Pathway</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/ProcessSequence"/>
<terms:identifier>Path</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/At_Mutant">
<rdfs:label xml:lang="en">Arabidopsis Mutant</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Mutant plant of Arabidopsis</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Organism"/>
<terms:identifier>At_Mutant</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/EST">
<rdfs:label xml:lang="en">EST</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">"single-pass" cDNA sequence, or Expressed Sequence Tag</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/NASEQ"/>
<terms:identifier>EST</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/dDNA">
<rdfs:label xml:lang="en">dsDNA</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Double stranded deoxyribonucleic acid</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/DNA"/>
</rdfs:subClassOf>
<terms:identifier>dDNA</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/ExpressionAffector">
<rdfs:label xml:lang="en">ExpressionAffector</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>ExpressionAffector</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MeshTerm">
<rdfs:label xml:lang="en">MESH-related term</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A MESH-related term</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/OntologyTerms"/>
<terms:identifier>MeshTerm</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/TF">
<rdfs:label xml:lang="en">Transcription factor</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A transcription factor is a protein that regulates the expression of one or more gene by binding to an associated DNA region (see TFBS).</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Protein"/>
</rdfs:subClassOf>
<terms:identifier>TF</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/CelComp">
<rdfs:label xml:lang="en">Cellular_Component</rdfs:label>
<terms:description xml:lang="en">Cellular Component (GO)</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/GeneOntologyTerms"/>
<terms:identifier>CelComp</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Transporter">
<rdfs:label xml:lang="en">Transporter</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A protein that transports compounds through membranes between different cellular compartments.</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Protein"/>
</rdfs:subClassOf>
<terms:identifier>Transporter</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Annotation">
<rdfs:label xml:lang="en">Annotation</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>Annotation</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/TRNAGene">
<rdfs:label xml:lang="en">tRNA-Gene</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NcRNAGene"/>
</rdfs:subClassOf>
<terms:identifier>TRNAGene</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MolCmplx">
<rdfs:label xml:lang="en">Molecule Complex</rdfs:label>
<terms:description xml:lang="en">An entity comprised of one or more molecules</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Participant"/>
<terms:identifier>MolCmplx</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/ECorg">
<rdfs:label xml:lang="en">ECorg</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Used by Brenda, a number belongs to one EC and one Organism</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/EC"/>
</rdfs:subClassOf>
<terms:identifier>ECorg</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Comp">
<rdfs:label xml:lang="en">Compound</rdfs:label>
<terms:description xml:lang="en">a chemical compound</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Molecule"/>
</rdfs:subClassOf>
<terms:identifier>Comp</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GRO">
<rdfs:label xml:lang="en">Cereal Plant Growth Stages</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">The controlled vocabulary of growth and developmental stages in various cereal plants. Examples are germination, seedling, booting, flowering, etc. Available only for rice, maize, sorghum, wheat, wheat, oat and barley</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/PlantOntologyTerms"/>
<terms:identifier>GRO</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Interaction">
<rdfs:label xml:lang="en">Interaction</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>Interaction</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MeshSupplementalRecord">
<rdfs:label xml:lang="en">MeSH Supplementary Record</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A supplementary record from MeSH</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/MeshTerm"/>
<terms:identifier>MeshSupplementalRecord</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Plant_Hormone">
<rdfs:label xml:lang="en">Plant Hormone</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Plant Hormone treatment</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Treatment"/>
<terms:identifier>Plant_Hormone</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MeshDescriptor">
<rdfs:label xml:lang="en">MeSH Descriptor</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A descriptor record from MeSH</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/MeshTerm"/>
<terms:identifier>MeshDescriptor</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/YPrime">
<rdfs:label xml:lang="en">YPrimeElement</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/TRRSubFeature"/>
<terms:identifier>YPrime</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Molecule">
<rdfs:label xml:lang="en">Molecule</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">A molecule is comprised of one or more atoms that form a single component through covalent bonds.</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Participant"/>
<terms:identifier>Molecule</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/XRegion">
<rdfs:label xml:lang="en">XRegion</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MatingLocusSubFeature"/>
</rdfs:subClassOf>
<terms:identifier>XRegion</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/RRNA">
<rdfs:label xml:lang="en">rRNA</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/ncRNA"/>
<terms:identifier>RRNA</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Disease">
<rdfs:label xml:lang="en">Disease</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Human Diseases</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/ExpressionAffector"/>
<terms:identifier>Disease</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/SIRNA">
<rdfs:label xml:lang="en">siRNA</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Small Interfering RNA</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/ncRNA"/>
<terms:identifier>SIRNA</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/Localizable">
<rdfs:label xml:lang="en">Localizable</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">An abstract or physical concept that can have a location.</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>Localizable</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/QTL">
<rdfs:label xml:lang="en">Quantitative Trait Locus</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">Quantitative Trait Locus</terms:description>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature"/>
</rdfs:subClassOf>
<terms:identifier>QTL</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/PWM">
<rdfs:label xml:lang="en">Position specific Weight Matrix</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<terms:description xml:lang="en">pwm represents a scoring scheme for potential dna binding sites of a transcription factor</terms:description>
<rdfs:subClassOf rdf:resource="http://knetminer.org/data/rdf/terms/biokno/Concept"/>
<terms:identifier>PWM</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GIDR">
<rdfs:label xml:lang="en">Dosage Rescue</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GenInt"/>
</rdfs:subClassOf>
<terms:identifier>GIDR</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GISHI">
<rdfs:label xml:lang="en">Synthetic Haploinsufficiency</rdfs:label>
<bk:isOndexPreferred rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean"
>true</bk:isOndexPreferred>
<rdfs:subClassOf>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/GenInt"/>
</rdfs:subClassOf>
<terms:identifier>GISHI</terms:identifier>
</owl:Class>
<owl:Class rdf:about="http://knetminer.org/data/rdf/terms/biokno/MicroArrayExperiment">
<rdfs:label xml:lang="en">MicroArrayExperiment</rdfs:label>
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