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FullCOPAP2.nw
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(Stylonychia-lemnae:2.1696,(Symbiodinium-microadriaticum:2.76188,((((Hondaea-fermentalgiana:0.995792,(Emiliania-huxleyi:1.48442,((Ectocarpus-siliculosus:0.727169,Thalassiosira-pseudonana:0.871953)1:0.504892,(Encephalitozoon-cuniculi:1.92551,Giardia-intestinalis:2.50044)0.948:0.399612)0.902:0.118079)0.763:0.163259)0.858:0.212303,((Phytophthora-sojae:0.87762,Tribonema-minus:0.678539)0.999:0.20439,((Blastocystis-spsubtype:1.49342,(Cafeteria-roenbergensis:0.836966,Symbiodinium-spKB8:1.02377)0.989:0.258627)1:0.248967,(Acanthamoeba-castellanii:0.989246,((Leishmania-major:0.359402,Trypanosoma-brucei:0.331218)1:1.29028,(Reticulomyxa-filosa:2.15211,Entamoeba-histolytica:0.964901)0.708:0.290797)0.991:0.314481)0.787:0.0850906)0.896:0.165681)0.514:0.0741526)0.997:0.140688,((Klebsormidium-nitens:0.713724,(Physcomitrella-patens:0.499444,(Ceratopteris-richardii:0.469458,(Arabidopsis-thaliana:0.429942,(Oryza-sativa:0.13085,Zea-mays:0.141033)1:0.29894)1:0.22079)0.271:0.0745668)1:0.197438)1:0.38792,((Chlorella-variabilis:0.576561,(Chlamydomonas-eustigma:0.484686,Volvox-carteri:0.779765)1:0.163127)1:0.228309,(Micromonas-pusilla:0.683624,(Ostreococcus-lucimarinus:0.501802,Bathycoccus-prasinos:0.641233)0.825:0.106078)1:0.41641)0.983:0.140154)1:0.353507)1:0.119031,(Guillardia-theta:1.29088,((Aureococcus-anophagefferens:1.05238,(Fragilariopsis-cylindrus:0.693491,Phaeodactylum-tricornutum:0.62362)1:0.499912)1:0.298764,((((Plasmodiophora-brassicae:1.5571,(Gracilariopsis-chorda:1.21864,(Cyanidioschyzon-merolae:1.08304,Galdieria-sulphuraria:1.15145)0.175:0.144031)1:0.335557)0.664:0.15163,((Naegleria-gruberi:1.60875,(Paramecium-sonneborni:0.0611109,Paramecium-tetraurelia:0.0417998)1:2.10053)0.677:0.137675,(Dictyostelium-purpureum:0.707576,Heterostelium-album:0.996521)1:0.605971)0.479:0.0841569)0.937:0.0647542,(Trichomonas-vaginalis:2.45719,Vitrella-brassicaformis:1.80869)0.954:0.261126)0.435:0.0599483,((Gonapodya-prolifera:1.26722,(((((Schizosaccharomyces-pombe:0.696427,(Taphrina-deformans:0.547225,Saitoella-complicata:0.58736)0.88:0.0868778)0.828:0.0891515,(((Aspergillus-nidulans:0.855282,(Penicillium-decumbens:0.478767,Uncinocarpus-reesii:0.381238)0.689:0.0884203)1:0.148886,(Pyricularia-oryzae:0.461067,Neurospora-crassa:0.421209)1:0.32717)1:0.358691,(Candida-albicans:0.750159,Saccharomyces-cerevisiae:0.729129)1:0.34807)0.255:0.0700505)1:0.19446,(Leucosporidium-creatinivorum:0.988492,(Ustilago-maydis:0.560026,((Cryptococcus-neoformans:0.27257,Kwoniella-mangroviensis:0.282218)1:0.649766,(Postia-placenta:0.399852,(Armillaria-gallica:0.432624,(Agaricus-bisporus:0.498821,Coprinopsis-cinerea:0.443465)0.995:0.0829091)0.989:0.076142)1:0.449672)0.967:0.0911779)0.999:0.0884325)1:0.134792)0.994:0.0747301,(Allomyces-macrogynus:0.735931,Catenaria-anguillulae:0.848521)1:0.801328)0.958:0.0869261,((Conidiobolus-coronatus:0.858133,(Smittium-mucronatum:0.613729,(Coemansia-reversa:0.355628,Linderina-pennispora:0.352136)1:0.342866)1:0.284875)0.385:0.0845267,(((Hesseltinella-vesiculosa:0.440352,(Rhizopus-microsporus:0.301654,(Syncephalastrum-racemosum:0.301703,Phycomyces-blakesleeanus:0.315748)0.98:0.0710606)0.854:0.0802659)1:0.398302,(Lobosporangium-transversale:0.128015,Podila-verticillata:0.198996)1:0.419125)0.983:0.114306,(Rhizophagus-irregularis:0.868434,Basidiobolus-meristosporus:0.600722)0.583:0.0715283)0.984:0.0915358)1:0.134511)0.986:0.0978369)1:0.196331,((Sphaeroforma-arctica:1.30202,Monosiga-brevicollis:1.14494)0.873:0.173595,(Capsaspora-owczarzaki:0.968592,(Ramazzottius-varieornatus:1.1062,(((Intoshia-linei:1.13402,(Thelohanellus-kitauei:0.628411,(Myxobolus-squamalis:0.375069,Henneguya-salminicola:0.302413)0.266:0.0983124)1:1.00899)0.942:0.182397,(Trichinella-spiralis:0.746162,(Caenorhabditis-elegans:0.881822,Toxocara-canis:0.669475)1:0.397517)0.998:0.159163)0.973:0.107245,((Adineta-steineri:0.125715,(Rotaria-magnacalcarata:0.0872623,Rotaria-sp.Silwood1:0.0775993)0.377:0.0320869)1:1.02549,((Macrostomum-lignano:0.689835,((Echinococcus-granulosus:0.246675,Mesocestoides-corti:0.153964)1:0.266988,(Schistosoma-mansoni:0.268201,(Fasciola-hepatica:0.235142,Opisthorchis-viverrini:0.226776)0.971:0.0632922)1:0.23348)1:0.378497)1:0.303532,(Dimorphilus-gyrociliatus:0.978266,(Helobdella-robusta:0.737393,((Priapulus-caudatus:0.747586,(Capitella-teleta:0.586937,((Crassostrea-gigas:0.403275,Octopus-bimaculoides:0.416194)1:0.0746812,(Lingula-anatina:0.309486,Owenia-fusiformis:0.547284)0.987:0.0522548)0.797:0.043496)0.892:0.0511539)0.935:0.0415029,(((Amphimedon-queenslandica:0.716358,(Hydra-vulgaris:0.689533,(Dendronephthya-gigantea:0.459959,Nematostella-vectensis:0.387326)1:0.086446)1:0.105314)1:0.0910548,((Oikopleura-dioica:1.28083,(Styela-clava:0.399787,(Ciona-intestinalis:0.351043,Phallusia-mammillata:0.25702)1:0.178932)1:0.177161)1:0.198215,(Branchiostoma-floridae:0.443689,(Petromyzon-marinus:0.4449,((Tetraodon-nigroviridis:0.179129,((Astyanax-mexicanus:0.0622832,Danio-rerio:0.0890573)1:0.0574476,(Poecilia-formosa:0.0854149,Takifugu-rubripes:0.0912382)1: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