diff --git a/.github/workflows/workflow_website.yaml b/.github/workflows/workflow_website.yaml index 3e593f232..20dfea02c 100644 --- a/.github/workflows/workflow_website.yaml +++ b/.github/workflows/workflow_website.yaml @@ -47,16 +47,16 @@ jobs: pip install .[docs] - name: Build imputation comparison website run: | - pimms-setup-imputation-comparison -f project/runs/dev_dataset_small/proteinGroups_N50/ - cd project/runs/dev_dataset_small/proteinGroups_N50/ + pimms-setup-imputation-comparison -f runs/alzheimer_study_2023_11_v2/ + cd runs/alzheimer_study_2023_11_v2/ sphinx-build -n --keep-going -b html ./ ./_build/ - name: Archive results uses: actions/upload-artifact@v3 with: name: example-workflow-results-${{ matrix.os }} - path: project/runs/dev_dataset_small/proteinGroups_N50/_build/ + path: runs/alzheimer_study_2023_11_v2/ - name: Publish workflow as website uses: peaceiris/actions-gh-pages@v4 with: github_token: ${{ secrets.GITHUB_TOKEN }} - publish_dir: project/runs/dev_dataset_small/proteinGroups_N50/_build/ \ No newline at end of file + publish_dir: runs/alzheimer_study_2023_11_v2/_build/ \ No newline at end of file diff --git a/project/config/alzheimer_study/config.yaml b/project/config/alzheimer_study/config.yaml index a8abf1914..03a90d464 100644 --- a/project/config/alzheimer_study/config.yaml +++ b/project/config/alzheimer_study/config.yaml @@ -57,8 +57,8 @@ NAGuideR_methods: - IRM - KNN_IMPUTE - LLS - - MICE-CART - - MICE-NORM + # - MICE-CART > 1h20min on GitHub small runner + # - MICE-NORM ~ 1h on GitHub small runner - MINDET - MINIMUM - MINPROB