Problem installing DECoN on ubuntu Failed to install VGAM (0.9-8)

[lakhujanivijay]

Hi

I have downloaded the zip file from this location, and extracted it.

Then, in the folder I executed

sudo ./setup.sh

and this is the log that is generated.

* installing *source* package ‘packrat’ ...
** package ‘packrat’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (packrat)
Installing BiocGenerics (0.12.1) ... OK (built source)
Installing DBI (0.3.1) ... OK (built source)
Installing R.methodsS3 (1.7.0) ... OK (built source)
Installing R6 (2.0.1) ... OK (built source)
Installing RColorBrewer (1.1-2) ... OK (built source)
Installing RJSONIO (1.3-0) ... OK (built source)
Installing Rcpp (0.11.6) ... OK (built source)
Installing VGAM (0.9-8) ... Error in installPkg(pkgRecord, project, availablePkgs, repos, lib, cache) : 
  Failed to install VGAM (0.9-8): sources missing at /home/bioinfo/RahmanTeam-DECoN-8d740c5/Linux/packrat/src/VGAM/VGAM_0.9-8.tar.gz
Calls: <Anonymous> -> restoreImpl -> playActions -> installPkg
In addition: Warning message:
In packrat::restore() :
  The most recent snapshot was generated using R version 3.1.2
Execution halted

My R sessionInfo

> sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.6 LTS

locale:
 [1] LC_CTYPE=en_IN       LC_NUMERIC=C         LC_TIME=en_IN       
 [4] LC_COLLATE=en_IN     LC_MONETARY=en_IN    LC_MESSAGES=en_IN   
 [7] LC_PAPER=en_IN       LC_NAME=C            LC_ADDRESS=C        
[10] LC_TELEPHONE=C       LC_MEASUREMENT=en_IN LC_IDENTIFICATION=C 

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

loaded via a namespace (and not attached):
[1] tools_3.2.3

[zhangting1991]

I got this kind error either, and I downloaded VGAM_0.9-8.tar.gz manually under /Linux/packrat/src/VGAM/, and run setup.sh again. The VGAM error dispeared but another package source missing error occured so I manually downloaded every error package. Finally succeeded.