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Error in running IdentifyFailures #35

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polymerase2010 opened this issue Dec 14, 2021 · 1 comment
Open

Error in running IdentifyFailures #35

polymerase2010 opened this issue Dec 14, 2021 · 1 comment

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@polymerase2010
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polymerase2010 commented Dec 14, 2021

In IdentifyFailures.R,Somtimes have error "Error in `[.default`(exons$Custom.Exon, a) : invalid subscript type 'list'  "

I fount the reason: "a" is a list, exons$Custom[a] can not return values from a list.
Can you fix it ?

151 Brca<-which(colSums(brca)!=0)
152
153 a<-apply(brca[,Brca,drop=F],2,which)
154
155 Clinical_Numbering=rep("NA",length(Exon))
156
157 Clinical_Numbering[paste(Exon)%in%row.names(failed.calls[Brca,])] = exons$Custom[a]

@buch1019
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I also faced the same problem. I don't know how to fix it. @polymerase2010 Is this problem solved successfully?

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