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Exporting corrected count matrix instead of scaled data #4

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Yolanda-HT opened this issue Jul 5, 2020 · 0 comments
Open

Exporting corrected count matrix instead of scaled data #4

Yolanda-HT opened this issue Jul 5, 2020 · 0 comments

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@Yolanda-HT
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  • Randomly version: 0.1.0
  • Python version: 3.6.3
  • Operating System: Linux x86_64

Description

The output from Randomly has mean of ~ 0 for each gene (preprocess step centered data around zero after log2(1+TPM) transformation and filter). I am wondering if it is possible to add additional function to export a matrix that mimics a count matrix (some of the downstream packages I am using prefer to use count matrix as input.)

Thank you!

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