From 19f622de5f5292068c37e553c4856eaee2e432f3 Mon Sep 17 00:00:00 2001 From: ecwood Date: Wed, 26 Jul 2023 14:10:02 -0700 Subject: [PATCH] #332 miRBase - standardize to kg_jsonl for JSON Lines representation --- .github/workflows/main.yml | 2 +- mirbase_dat_to_kg_json.py => mirbase_dat_to_kg_jsonl.py | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename mirbase_dat_to_kg_json.py => mirbase_dat_to_kg_jsonl.py (100%) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 1fd24a05..86c6e537 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -35,6 +35,6 @@ jobs: run: | cd /home/runner/work/RTX-KG2/RTX-KG2/RTX-KG2 bash -x ./extract-mirbase.sh ~/kg2-build/miRNA.dat - ~/kg2-venv/bin/python3 -u mirbase_dat_to_kg_json.py ~/kg2-build/miRNA.dat ~/kg2-build/kg2-mirbase-nodes.jsonl ~/kg2-build/kg2-mirbase-edges.jsonl --test + ~/kg2-venv/bin/python3 -u mirbase_dat_to_kg_jsonl.py ~/kg2-build/miRNA.dat ~/kg2-build/kg2-mirbase-nodes.jsonl ~/kg2-build/kg2-mirbase-edges.jsonl --test ~/kg2-venv/bin/python3 -u report_stats_on_kg_jsonl.py ~/kg2-build/kg2-mirbase-nodes.jsonl ~/kg2-build/kg2-mirbase-edges.jsonl ~/kg2-build/kg2-mirbase-report.json cat ~/kg2-build/kg2-mirbase-report.json \ No newline at end of file diff --git a/mirbase_dat_to_kg_json.py b/mirbase_dat_to_kg_jsonl.py similarity index 100% rename from mirbase_dat_to_kg_json.py rename to mirbase_dat_to_kg_jsonl.py