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create_apptainer.sif

With this repository, we want to use apptainer to create sustainable environments for scientific reproduction. For utilisation, clone this repository To use Zenodo, you first need to create a repository and verify the repository ID. You also need to create a TOKEN and place it in your github repository secret.

Utilisation

Modify one script, image.def for example, or create a new one, and make sure that the workflows you use the right script to build the apptainer environment.

Github artifact utilisation:

  • In the workflows, comment on the publication part on zenodo
  • You can check the id of the run and use the apptainer environment to render a paper in (render_project)[https://github.com/Qufst/run_sif_and_deploy]. Or you can import the artifact manually.

We also want to push apptainer environments on Zenodo, so we have the second method:

  • in the workflows, comment out the artifact publication part.
  • in the zenodo.sh script, change the version and release date to match expectations, otherwise the release will fail. Don't forget to descrive the environment in the description, put the version of what you use.