runtests.yml

name: runtests

on:
  workflow_dispatch:
    inputs:
      debug:
        type: boolean
        required: false
        default: false
      bypass-cache:
        type: boolean
        required: false
        default: false
      run_fuse_with_extensions:
        type: boolean
        required: false
        default: false
  push:
    branches:
      - master
      - dev
  pull_request:
  schedule:
    - cron: '7 0 * * *' # midnight PT

env:
  PTP_READ_TOKEN: ${{ secrets.PTP_READ_TOKEN }}

concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  test:
    name: Julia ${{ matrix.flavor.version }} - ${{ matrix.flavor.os }} - ${{ matrix.flavor.arch }}
    runs-on: ${{ matrix.flavor.os }}
    strategy:
      fail-fast: false
      matrix:
        flavor:
          - { os: ubuntu-latest, arch: x64, version: "1.x" }
          - { os: macos-latest, arch: arm64, version: "1.x" }
#          - { os: windows-latest, arch: x86, version: "1.x" }
    env:
      GKSwstype: 100 # disable Plots.jl interactive output

    steps:
      - name: Check if Scheduled Run
        id: is-scheduled
        run: |
          if [ "${{ github.event_name }}" == "schedule" ] || [ "${{ github.event.inputs.run_fuse_with_extensions }}" == "true" ]; then
            echo "FUSE_WITH_EXTENSIONS=true" >> $GITHUB_ENV
          else
            echo "FUSE_WITH_EXTENSIONS=false" >> $GITHUB_ENV
          fi

      - name: Display Run Type
        run: echo "Is this a FUSE_WITH_EXTENSIONS run? ${{ env.FUSE_WITH_EXTENSIONS }}"

      - name: Get number of CPU cores
        uses: SimenB/github-actions-cpu-cores@v2
        id: cpu-cores

      - name: Set JULIA_NUM_THREADS=${{ steps.cpu-cores.outputs.count }}
        run: echo "JULIA_NUM_THREADS=${{ steps.cpu-cores.outputs.count }}" >> $GITHUB_ENV

      - uses: actions/checkout@v4

      # Julia setup
      - uses: julia-actions/setup-julia@v1
        with:
          version: ${{ matrix.flavor.version }}
          arch: ${{ matrix.flavor.arch }}
          show-versioninfo: true

      # Cache key generation
      - name: Generate cache key with date
        id: cache-date
        run: echo "{date}=$(date +%Y-%m-%d)" >> $GITHUB_STATE

      # Cache Julia artifacts
      - name: Cache Julia artifacts
        uses: actions/cache@v4
        if: github.event.inputs.bypass-cache != 'true'
        with:
          path: |
            ~/.julia/artifacts
            ~/.julia/packages
            ~/.julia/compiled
          key: ${{ runner.os }}-julia-${{ matrix.flavor.version }}-${{ matrix.flavor.os }}-${{ matrix.flavor.arch }}-${{ steps.cache-date.outputs.date }}

      # FuseRegistry management on macOS
      - name: Remove FuseRegistry and Add Registry on macOS
        if: matrix.flavor.os == 'macos-latest'
        run: |
          rm -rf ~/.julia/registries/FuseRegistry
          julia -e 'using Pkg; Pkg.Registry.add(RegistrySpec(url="https://github.com/ProjectTorreyPines/FuseRegistry.jl.git")); Pkg.Registry.add("General"); Pkg.Registry.update()'
          find ~/.julia/registries/FuseRegistry -type f -name 'Package.toml' -exec sed -i '' 's|git@github.com:|https://project-torrey-pines:${{secrets.PTP_READ_TOKEN}}@github.com/|g' {} +

      # FuseRegistry management on Linux
      - name: Remove FuseRegistry and Add Registry on Linux
        if: matrix.flavor.os == 'ubuntu-latest'
        run: |
          rm -rf ~/.julia/registries/FuseRegistry
          julia -e 'using Pkg; Pkg.Registry.add(RegistrySpec(url="https://github.com/ProjectTorreyPines/FuseRegistry.jl.git")); Pkg.Registry.add("General"); Pkg.Registry.update()'
          find ~/.julia/registries/FuseRegistry -type f -name 'Package.toml' -exec sed -i 's|git@github.com:|https://project-torrey-pines:${{secrets.PTP_READ_TOKEN}}@github.com/|g' {} +

      # FuseRegistry management on Windows
      - name: Remove FuseRegistry and Add Registry on Windows
        if: matrix.flavor.os == 'windows-latest'
        shell: pwsh
        run: |
          if (Test-Path "$env:USERPROFILE\.julia\registries\FuseRegistry") {
            Write-Host "Removing FuseRegistry directory..."
            Remove-Item -Recurse -Force "$env:USERPROFILE\.julia\registries\FuseRegistry"
          } else {
            Write-Host "Directory does not exist, skipping removal."
          }
          julia -e 'using Pkg; Pkg.Registry.add(RegistrySpec(url="https://github.com/ProjectTorreyPines/FuseRegistry.jl.git")); Pkg.Registry.add("General"); Pkg.Registry.update()'
          Get-ChildItem -Path "$env:USERPROFILE\.julia\registries\FuseRegistry" -Recurse -Filter 'Package.toml' | ForEach-Object {
            (Get-Content $_.FullName) -replace 'git@github.com:', 'https://project-torrey-pines:${{secrets.PTP_READ_TOKEN}}@github.com/' | Set-Content $_.FullName
          }

      - name: 'Install (without extensions)'
        if: env.FUSE_WITH_EXTENSIONS == 'false'
        run: make install_ci_add NO_FUSE_EXTENSION=true

      - name: 'Install (with extensions)'
        if: env.FUSE_WITH_EXTENSIONS == 'true'
        run: make install_ci_add

      # Save Manifest.toml
      - name: 'Save Manifest.toml'
        uses: actions/upload-artifact@v4
        with:
          name: Manifest-${{ matrix.flavor.os }}-${{ matrix.flavor.arch }}
          path: Manifest.toml

      # Build
      - uses: julia-actions/julia-buildpkg@v1

      # Run tests
      - uses: julia-actions/julia-runtest@v1

      # Code coverage
      - uses: julia-actions/julia-processcoverage@v1
      - uses: codecov/codecov-action@v5
        with:
          files: lcov.info