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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Changed

  • function transform_data_to_vectors

    • the logic were change from os.replace(temp_file.name, model_file) to os.rename(temp_file_path, model_file) => speed

  • In features is better to have [0 or 1 or 2 or 3] compared to one hot encoded [0, 0, 0]. Pros: The file is more readable. The features are in Model embedded.

  • In case for gene prediction there cannot be all features from gff3 features such as mRNA does not make sense cuz where gene there is mRNA also feature exon => The user specifies in config.py which features want from .gff3 file. e.g GFF3_FEATURES = ["miRNA", "rRNA", "gene"]