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The variants are almost Silent #1056

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DayTimeMouse opened this issue Oct 12, 2024 · 2 comments
Open

The variants are almost Silent #1056

DayTimeMouse opened this issue Oct 12, 2024 · 2 comments
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@DayTimeMouse
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Hi,

When I use read.maf to read maf file, but almost variants are silent(silent variants/all variants: 16874/17013).

I am unsure about that is annotation problem or something.
df = read.maf('filter.vep.maf')

plotmafSummary(maf = df,
               rmOutlier = T,
               showBarcodes = F,
               textSize = 0.4,
               addStat = 'median',
               dashboard = TRUE,
               titvRaw = FALSE)
-Reading
-Validating
-Silent variants: 16874 
-Summarizing
-Processing clinical data
--Missing clinical data
-Finished in 0.360s elapsed (3.499s cpu)

Rplot01

Best regards.

@PoisonAlien
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Hi,

It's hard to know without seeing the data. If it is WGS, I guess it is possible.

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This issue is stale because it has been open for 60 days with no activity.

@github-actions github-actions bot added the stale label Dec 12, 2024
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