From e3fec3968d87662a6bd6ca45e21e340a24198e36 Mon Sep 17 00:00:00 2001 From: Tom Whalley Date: Fri, 6 Sep 2024 12:36:24 +0000 Subject: [PATCH] bwa index --- docker/Dockerfile.ntmprofiler-0.9.9 | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docker/Dockerfile.ntmprofiler-0.9.9 b/docker/Dockerfile.ntmprofiler-0.9.9 index 8c230c1..46c60e1 100644 --- a/docker/Dockerfile.ntmprofiler-0.9.9 +++ b/docker/Dockerfile.ntmprofiler-0.9.9 @@ -48,3 +48,5 @@ ENV PATH="/opt/conda/bin:${PATH}" WORKDIR /data RUN ntm-profiler update_db #--commit ${NTMDB_VER} + +RUN for file in /opt/conda/share/ntm-profiler/*fasta ; do bwa index $file ; done