From cb0e6f93d5192d4acaede1867772ff439feaf67c Mon Sep 17 00:00:00 2001 From: whalleyt Date: Fri, 10 Nov 2023 16:28:13 +0000 Subject: [PATCH] arbitary push to trigger ci correctly --- docker/Dockerfile.clockwork-0.9.7r1 | 1 - docker/Dockerfile.preprocessing-0.9.7r1 | 1 - docker/Dockerfile.vcfpredict-0.9.7r1 | 1 - 3 files changed, 3 deletions(-) diff --git a/docker/Dockerfile.clockwork-0.9.7r1 b/docker/Dockerfile.clockwork-0.9.7r1 index a1f0155..d45b6c4 100644 --- a/docker/Dockerfile.clockwork-0.9.7r1 +++ b/docker/Dockerfile.clockwork-0.9.7r1 @@ -18,7 +18,6 @@ stampy_version=1.0.32r3761 \ python_version=3.6.5 \ clockwork_version=2364dec4cbf25c844575e19e8fe0a319d10721b5 - ENV PACKAGES="procps curl git build-essential wget zlib1g-dev pkg-config jq r-base-core rsync autoconf libncurses-dev libbz2-dev liblzma-dev libcurl4-openssl-dev cmake tabix libvcflib-tools libssl-dev software-properties-common perl locales locales-all" \ PYTHON="python2.7 python-dev" diff --git a/docker/Dockerfile.preprocessing-0.9.7r1 b/docker/Dockerfile.preprocessing-0.9.7r1 index c8c7de1..4aaf538 100644 --- a/docker/Dockerfile.preprocessing-0.9.7r1 +++ b/docker/Dockerfile.preprocessing-0.9.7r1 @@ -18,7 +18,6 @@ bwa_version=0.7.17 \ mash_version=2.3 \ fastani_version=1.33 - ENV PACKAGES="procps curl git wget build-essential zlib1g-dev libncurses-dev libz-dev libbz2-dev liblzma-dev libcurl4-openssl-dev libgsl-dev rsync unzip ncbi-blast+ pigz jq libtbb-dev openjdk-11-jre-headless autoconf r-base-core locales locales-all" \ PYTHON="python3 python3-pip python3-dev" \ PYTHON_PACKAGES="biopython awscli" diff --git a/docker/Dockerfile.vcfpredict-0.9.7r1 b/docker/Dockerfile.vcfpredict-0.9.7r1 index 68d928e..21e19e9 100644 --- a/docker/Dockerfile.vcfpredict-0.9.7r1 +++ b/docker/Dockerfile.vcfpredict-0.9.7r1 @@ -15,7 +15,6 @@ tuberculosis_amr_catalogues=12d38733ad2e238729a3de9f725081e1d4872968 COPY bin/ /opt/bin/ ENV PATH=/opt/bin:$PATH - RUN apt-get update \ && DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get -y install tzdata \ && apt-get install -y $PACKAGES $PYTHON \