diff --git a/docker/Dockerfile.tbprofiler-0.9.8 b/docker/Dockerfile.tbprofiler-0.9.8 index 468d706..b7f6d80 100644 --- a/docker/Dockerfile.tbprofiler-0.9.8 +++ b/docker/Dockerfile.tbprofiler-0.9.8 @@ -36,6 +36,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \ # install tb-profiler via bioconda; install into 'base' conda env RUN micromamba install --yes --name base --channel conda-forge --channel bioconda \ tb-profiler=${TBPROFILER_VER} && \ + micromamba install -c bioconda -c conda-forge gatk4 && \ micromamba clean --all --yes # hardcode 'base' env bin into PATH, so conda env does not have to be "activated" at run time