diff --git a/README.md b/README.md index f14831d..38f39c7 100644 --- a/README.md +++ b/README.md @@ -127,6 +127,9 @@ process clockwork:alignToRef\ process clockwork:minos\ 26. (Warn) If sample is not TB, then it is not passed to gnomonicus +## Running on CLIMB Jupyter Hub +There is a pre-configured climb profile to run Lodestone on a CLIMB Jupyter Notebook Server. Add ```profile climb,docker``` your command invocation. The input directory can point to an S3 bucket natively (e.g. ```--input_dir s3://my-team/bucket```). + ## Acknowledgements ## For a list of direct authors of this pipeline, please see the contributors list. All of the software dependencies of this pipeline are recorded in the version.json