From 6bdee12e8b771a3b2547c057da4c97c7b717e21e Mon Sep 17 00:00:00 2001
From: PatBall1 <PatBall1@users.noreply.github.com>
Date: Tue, 26 Nov 2024 11:14:11 +0000
Subject: [PATCH] deploy: 10eb3d1fb47c55011d1966cd38498de37d79e7d8

---
 .doctrees/cluster.doctree     | Bin 43289 -> 42418 bytes
 .doctrees/environment.pickle  | Bin 360381 -> 360140 bytes
 _sources/cluster.rst.txt      |   6 +++---
 cluster.html                  |  14 +++++++-------
 contributing.html             |   6 +++---
 detectree2.data_loading.html  |   2 +-
 detectree2.html               |   2 +-
 detectree2.models.html        |   2 +-
 detectree2.preprocessing.html |   2 +-
 detectree2.tests.html         |   2 +-
 genindex.html                 |   2 +-
 index.html                    |   4 ++--
 installation.html             |   2 +-
 modules.html                  |   2 +-
 objects.inv                   | Bin 5552 -> 5510 bytes
 py-modindex.html              |   2 +-
 search.html                   |   2 +-
 searchindex.js                |   2 +-
 tutorial.html                 |   2 +-
 tutorial_multi.html           |   6 +++---
 usage.html                    |   2 +-
 using-git.html                |   2 +-
 22 files changed, 32 insertions(+), 32 deletions(-)

diff --git a/.doctrees/cluster.doctree b/.doctrees/cluster.doctree
index 0f3a295b23241f019d59a9a68438ac22ba53d96c..d0bf94b3fc5817bd8569d7c07ddc2e73780a5bfe 100644
GIT binary patch
delta 412
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delta 1025
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diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
index 3effc81ee011b255e8cbfda253933d079e975b47..1183762859f87db7c44276c7ea4219c4e2562ee1 100644
GIT binary patch
delta 15991
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diff --git a/_sources/cluster.rst.txt b/_sources/cluster.rst.txt
index aa3a35a..46d5f9c 100644
--- a/_sources/cluster.rst.txt
+++ b/_sources/cluster.rst.txt
@@ -1,8 +1,8 @@
-Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)
-===============================================================================
+Running in Jupyter Notebook on a HPC platform
+=============================================
 
 .. note::
-   This example is based on CSD3 for people associated with the University of Cambridge but the workflow can mostly be applied to other clusters as well.
+   This example is based on CSD3 for people associated with the University of Cambridge but the workflow can be applied to other HPC clusters.
 
 This guide provides step-by-step instructions on how to set up a virtual environment for Jupyter Notebook on an HPC system, run Jupyter Notebook on both login and compute nodes, install the ``detectree2`` package, and run it on a GPU compute node.
 
diff --git a/cluster.html b/cluster.html
index 9e413f1..2f7de2e 100644
--- a/cluster.html
+++ b/cluster.html
@@ -6,7 +6,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3) &mdash; detectree2 1.0.8 documentation</title>
+  <title>4. Running in Jupyter Notebook on a HPC platform &mdash; detectree2 1.0.8 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
@@ -48,7 +48,7 @@
 <li class="toctree-l1"><a class="reference internal" href="installation.html">1. Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial.html">2. Tutorial</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial_multi.html">3. Tutorial (multiclass)</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a><ul>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">4. Running in Jupyter Notebook on a HPC platform</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#setting-up-a-virtual-environment-for-jupyter-notebook">4.1. Setting Up a Virtual Environment for Jupyter Notebook</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#running-jupyter-notebook-on-the-login-node-cpu-only">4.2. Running Jupyter Notebook on the Login Node (CPU Only)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#running-jupyter-notebook-on-a-compute-node-cpu-or-gpu">4.3. Running Jupyter Notebook on a Compute Node (CPU or GPU)</a></li>
@@ -74,7 +74,7 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active"><span class="section-number">4. </span>Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</li>
+      <li class="breadcrumb-item active"><span class="section-number">4. </span>Running in Jupyter Notebook on a HPC platform</li>
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/cluster.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -84,17 +84,17 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <section id="running-jupyter-notebook-and-installing-detectree2-on-a-hpc-platform-like-csd3">
-<h1><a class="toc-backref" href="#id1" role="doc-backlink"><span class="section-number">4. </span>Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a><a class="headerlink" href="#running-jupyter-notebook-and-installing-detectree2-on-a-hpc-platform-like-csd3" title="Link to this heading"></a></h1>
+  <section id="running-in-jupyter-notebook-on-a-hpc-platform">
+<h1><a class="toc-backref" href="#id1" role="doc-backlink"><span class="section-number">4. </span>Running in Jupyter Notebook on a HPC platform</a><a class="headerlink" href="#running-in-jupyter-notebook-on-a-hpc-platform" title="Link to this heading"></a></h1>
 <div class="admonition note">
 <p class="admonition-title">Note</p>
-<p>This example is based on CSD3 for people associated with the University of Cambridge but the workflow can mostly be applied to other clusters as well.</p>
+<p>This example is based on CSD3 for people associated with the University of Cambridge but the workflow can be applied to other HPC clusters.</p>
 </div>
 <p>This guide provides step-by-step instructions on how to set up a virtual environment for Jupyter Notebook on an HPC system, run Jupyter Notebook on both login and compute nodes, install the <code class="docutils literal notranslate"><span class="pre">detectree2</span></code> package, and run it on a GPU compute node.</p>
 <nav class="contents" id="contents">
 <p class="topic-title">Contents</p>
 <ul class="simple">
-<li><p><a class="reference internal" href="#running-jupyter-notebook-and-installing-detectree2-on-a-hpc-platform-like-csd3" id="id1">Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></p>
+<li><p><a class="reference internal" href="#running-in-jupyter-notebook-on-a-hpc-platform" id="id1">Running in Jupyter Notebook on a HPC platform</a></p>
 <ul>
 <li><p><a class="reference internal" href="#setting-up-a-virtual-environment-for-jupyter-notebook" id="id2">Setting Up a Virtual Environment for Jupyter Notebook</a></p></li>
 <li><p><a class="reference internal" href="#running-jupyter-notebook-on-the-login-node-cpu-only" id="id3">Running Jupyter Notebook on the Login Node (CPU Only)</a></p></li>
diff --git a/contributing.html b/contributing.html
index 6b1d05c..cef6665 100644
--- a/contributing.html
+++ b/contributing.html
@@ -21,7 +21,7 @@
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="6. Git/Github" href="using-git.html" />
-    <link rel="prev" title="4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)" href="cluster.html" /> 
+    <link rel="prev" title="4. Running in Jupyter Notebook on a HPC platform" href="cluster.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -48,7 +48,7 @@
 <li class="toctree-l1"><a class="reference internal" href="installation.html">1. Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial.html">2. Tutorial</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial_multi.html">3. Tutorial (multiclass)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">5. Contributing guide</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#contributing-to-detectree2">5.1. Contributing to Detectree2</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="#code-of-conduct">5.1.1. Code of Conduct</a></li>
@@ -655,7 +655,7 @@ <h2><a class="toc-backref" href="#id50" role="doc-backlink"><span class="section
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="cluster.html" class="btn btn-neutral float-left" title="4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="cluster.html" class="btn btn-neutral float-left" title="4. Running in Jupyter Notebook on a HPC platform" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="using-git.html" class="btn btn-neutral float-right" title="6. Git/Github" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
diff --git a/detectree2.data_loading.html b/detectree2.data_loading.html
index 68ae938..e554937 100644
--- a/detectree2.data_loading.html
+++ b/detectree2.data_loading.html
@@ -46,7 +46,7 @@
 <li class="toctree-l1"><a class="reference internal" href="installation.html">1. Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial.html">2. Tutorial</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial_multi.html">3. Tutorial (multiclass)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="using-git.html">6. Git/Github</a></li>
 </ul>
diff --git a/detectree2.html b/detectree2.html
index 6770495..408e7e7 100644
--- a/detectree2.html
+++ b/detectree2.html
@@ -46,7 +46,7 @@
 <li class="toctree-l1"><a class="reference internal" href="installation.html">1. Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial.html">2. Tutorial</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial_multi.html">3. Tutorial (multiclass)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="using-git.html">6. Git/Github</a></li>
 </ul>
diff --git a/detectree2.models.html b/detectree2.models.html
index 0428500..114b3ae 100644
--- a/detectree2.models.html
+++ b/detectree2.models.html
@@ -46,7 +46,7 @@
 <li class="toctree-l1"><a class="reference internal" href="installation.html">1. Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial.html">2. Tutorial</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial_multi.html">3. Tutorial (multiclass)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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diff --git a/detectree2.preprocessing.html b/detectree2.preprocessing.html
index 7308e2f..4edb25d 100644
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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diff --git a/detectree2.tests.html b/detectree2.tests.html
index 69cc3c8..c8f7e18 100644
--- a/detectree2.tests.html
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@@ -46,7 +46,7 @@
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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diff --git a/genindex.html b/genindex.html
index ec12dfd..8dc81ee 100644
--- a/genindex.html
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
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 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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diff --git a/index.html b/index.html
index 3da73cc..dffab5f 100644
--- a/index.html
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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 </li>
-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="cluster.html#setting-up-a-virtual-environment-for-jupyter-notebook">4.1. Setting Up a Virtual Environment for Jupyter Notebook</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="cluster.html#running-jupyter-notebook-on-a-compute-node-cpu-or-gpu">4.3. Running Jupyter Notebook on a Compute Node (CPU or GPU)</a></li>
diff --git a/installation.html b/installation.html
index 91b14ee..a0332be 100644
--- a/installation.html
+++ b/installation.html
@@ -58,7 +58,7 @@
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
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diff --git a/modules.html b/modules.html
index 2901d28..1411cbb 100644
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
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 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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index 455e3ec..be09877 100644
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index f2779e7..46bfec6 100644
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
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 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
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-    <link rel="next" title="4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)" href="cluster.html" />
+    <link rel="next" title="4. Running in Jupyter Notebook on a HPC platform" href="cluster.html" />
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@@ -53,7 +53,7 @@
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
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+        <a href="cluster.html" class="btn btn-neutral float-right" title="4. Running in Jupyter Notebook on a HPC platform" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
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diff --git a/usage.html b/usage.html
index c219c1d..ae4dc23 100644
--- a/usage.html
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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diff --git a/using-git.html b/using-git.html
index 3e6b14d..c042bdb 100644
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+++ b/using-git.html
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 <li class="toctree-l1"><a class="reference internal" href="installation.html">1. Installation</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running Jupyter Notebook and Installing Detectree2 on a HPC platform (like CSD3)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="cluster.html">4. Running in Jupyter Notebook on a HPC platform</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">5. Contributing guide</a></li>
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