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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>uk.ac.ebi.pride.utilities</groupId>
<artifactId>pride-mod</artifactId>
<packaging>jar</packaging>
<version>2.1.13-SNAPSHOT</version>
<name>Modification Java core API</name>
<developers>
<developer>
<name>Yasset Perez-Riverol</name>
<id>yperez</id>
<email>[email protected]</email>
<organization>Proteomics Services Team, PANDA Group, EMBL-European Bioinformatics Institute</organization>
</developer>
<developer>
<id>mbernal</id>
<name>Manuel Bernal-Llinares</name>
<organization>Proteomics Team, EMBL-European Bioinformatics Institute</organization>
<organizationUrl>http://www.ebi.ac.uk/pride</organizationUrl>
<roles>
<role>developer</role>
</roles>
<timezone>Europe/London</timezone>
</developer>
</developers>
<properties>
<lombokVersion>1.18.24</lombokVersion>
</properties>
<dependencies>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.4</version>
</dependency>
<!-- Obo dependencies for PSI-Mod-->
<!-- oboedit -->
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-oboformat</artifactId>
<version>3.5.0</version>
</dependency>
<!-- oboedit -->
<!-- JAXB needs to be added for Java >= 9 -->
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.1</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
<version>2.3.1</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-core</artifactId>
<version>2.3.0</version>
</dependency>
<!-- JAXB additions -->
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<version>${lombokVersion}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>2.0.6</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<id>copy-dependencies</id>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${project.build.directory}/lib</outputDirectory>
<overWriteReleases>false</overWriteReleases>
<overWriteSnapshots>true</overWriteSnapshots>
<overWriteIfNewer>true</overWriteIfNewer>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<!-- you can use this plugin to generate the unimod object model from
the schema and binding files specified below. Note: this will
need an explicit maven goal call, since it is not integrated
into the standard mvn life cycle. The goal to use is:
org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.6.3:generate
NOTE: the code generation may overwrite existing classes, so care
should be taken with files that were manually modified.
-->
<groupId>org.jvnet.jaxb2.maven2</groupId>
<artifactId>maven-jaxb2-plugin</artifactId>
<version>0.13.1</version>
<configuration>
<extension>true</extension>
<schemaDirectory>src/main/resources</schemaDirectory>
<schemaIncludes>
<include>unimod.xsd</include>
<include>pride_mods.xsd</include>
</schemaIncludes>
<bindingDirectory>src/main/resources</bindingDirectory>
<bindingIncludes>
<include>pride-mods-bindings.xjb</include>
<!--<include>pride-unimod-bindings.xjb</include>-->
</bindingIncludes>
<generateDirectory>src/main/java2</generateDirectory>
<removeOldOutput>false</removeOldOutput>
<forceRegenerate>true</forceRegenerate>
<verbose>true</verbose>
<args>
<arg>-no-header</arg>
</args>
</configuration>
</plugin>
</plugins>
</build>
<!--scm git config-->
<scm>
<connection>scm:git:https://github.com/PRIDE-Utilities/pride-mod.git</connection>
<developerConnection>scm:git:https://github.com/PRIDE-Utilities/pride-mod.git</developerConnection>
<url>https://github.com/PRIDE-Utilities/pride-mod.git</url>
<tag>HEAD</tag>
</scm>
</project>