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NaI analytic potential for FSSH #1030

NaI analytic potential for FSSH

NaI analytic potential for FSSH #1030

Workflow file for this run

name: GFortran CI
# WARNING: When updating the OS version of the Github Actions runner,
# e.g. from Ubuntu 20.04 to 22.04, you need to manually update the cache keys!
# This is because there's no easy way to get the OS version from within this workflow file.
on:
push:
branches: [ master ]
pull_request:
env:
# FFLAGS for building ABIN, applicable for most jobs
ABIN_FFLAGS: -O0 -fopenmp --coverage -fprofile-abs-path -ffpe-trap=invalid,zero,overflow,denormal -fimplicit-none -Wall -Wno-integer-division -Wno-maybe-uninitialized
ABIN_LDLIBS: --coverage
OPTIMIZED_FFLAGS: -O3 -fopenmp -fimplicit-none -Wall -Wno-integer-division
# NOTE: It would be safer to only pass the secret token to the codecov-upload action,
# but the impact of this token leaking is small anyway.
# NOTE: It appears that even with this token there are issues,
# so for now we let the CI succeed even if the upload fails.
# Reported by many people also at:
# https://github.com/codecov/codecov-action/issues/926
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
jobs:
format:
name: Code format check
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Install fprettify dependencies
run: pip install configargparse
- name: Run fprettify
run: |
./autoformat.py
f=`git ls-files -m`; if [[ -n $f ]];then echo -e "ERROR: Detected unformatted files:\n$f";exit 1;fi
basic_build:
name: Basic build
runs-on: ubuntu-20.04
strategy:
fail-fast: false
matrix:
gcc_v: [7, 9, 10]
env:
FC: gfortran
GCC_V: ${{ matrix.gcc_v}}
CODECOV_NAME: ${{format('{0} GCC-{1}', github.job, matrix.gcc_v)}}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: Install GCC-7
if: matrix.gcc_v == 7
run: |
sudo apt install gcc-7 gfortran-7 g++-7
echo "ABIN_FFLAGS=${ABIN_FFLAGS/-fprofile-abs-path/}" >> $GITHUB_ENV
- name: Enable runtime checks
# It looks like this messes up the code coverage, so enabling only some builds
if: matrix.gcc_v != 7
run: |
echo "ABIN_FFLAGS=${ABIN_FFLAGS} -fcheck=all -fsanitize=address,undefined,leak" >> $GITHUB_ENV
echo "ABIN_LDLIBS=${ABIN_LDLIBS} -fsanitize=address,undefined,leak" >> $GITHUB_ENV
- name: Set GFortran version
run: |
sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_V} 100 \
--slave /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_V} \
--slave /usr/bin/gcov gcov /usr/bin/gcov-${GCC_V}
# pFUnit library is used to build and run unit tests
- name: pFUnit build Cache
id: pfunit-cache
uses: actions/cache@v4
with:
path: ~/pfunit/build/installed
# To force a pFUnit rebuild (bust the cache), make a change to install_pfunit.sh
key: ${{ runner.os }}-ubuntu20.04-pfunit-gfortran${{ env.GCC_V }}-${{ hashFiles('dev_scripts/install_pfunit.sh') }}
save-always: true
- name: Download and build pFUnit
if: steps.pfunit-cache.outputs.cache-hit != 'true'
run: ./dev_scripts/install_pfunit.sh ${HOME}/pfunit
- name: Build ABIN
run: ./configure --pfunit ${HOME}/pfunit/build/installed/ && make
env:
FFLAGS: ${{ env.ABIN_FFLAGS }}
LDLIBS: ${{ env.ABIN_LDLIBS }}
- name: Run Unit tests
run: make unittest
- name: Codecov upload unit tests
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
flags: unittests
fail_ci_if_error: true
- name: Run End-to-End tests
if: always()
run: make e2etest
- name: Codecov upload
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
fail_ci_if_error: true
intel_build:
name: Intel OneAPI build
runs-on: ubuntu-20.04
env:
FC: mpiifort
# Use GCC for C++ code to speed up the build
#CC: icc
#CXX: icpc
APT_PACKAGES: >-
intel-oneapi-compiler-fortran
intel-oneapi-mpi
intel-oneapi-mpi-devel
# intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: Add Intel repository
run: |
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
rm GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt-get update
- name: Install Intel oneAPI compiler
run: |
sudo apt-get install ${{ env.APT_PACKAGES }}
source /opt/intel/oneapi/setvars.sh
printenv >> $GITHUB_ENV
- name: Build ABIN
run: ./configure --mpi "" && make
env:
FFLAGS: -O0 -fopenmp -warn all,noextern
- name: Run End-to-End tests
run: make e2etest
tcpb_build:
name: TCPB build
runs-on: ubuntu-20.04
needs: basic_build
env:
FC: gfortran
CODECOV_NAME: ${{format('{0}', github.job)}}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: Install protocol buffers library
run: sudo apt install protobuf-compiler
- name: TCBP build cache
id: tcpb-cache
uses: actions/cache@v4
with:
path: ~/tcpb-cpp/lib
# To force a rebuild (bust the cache), make a change to install_tcpb.sh
key: ${{ runner.os }}-ubuntu20.04-tcpb-gfortran-default-${{ hashFiles('dev_scripts/install_tcpb.sh') }}
- name: Download and build tcpb_cpp
if: steps.tcpb-cache.outputs.cache-hit != 'true'
run: ./dev_scripts/install_tcpb.sh ${HOME}/tcpb-cpp
- name: Build ABIN
run: ./configure --tcpb ${HOME}/tcpb-cpp/lib && make
env:
FFLAGS: ${{ env.ABIN_FFLAGS }}
LDLIBS: ${{ env.ABIN_LDLIBS }}
- name: Run End-to-End tests
run: make e2etest
- name: Codecov upload
uses: codecov/codecov-action@v4
with:
name: tcpb
fail_ci_if_error: true
optimized_build:
name: Optimized build
# NOTE: We use a more recent Ubuntu version here
# so we can test more recent GCC versions.
runs-on: ubuntu-22.04
needs: basic_build
strategy:
fail-fast: false
matrix:
gcc_v: [9, 11, 12]
env:
FC: gfortran
GCC_V: ${{ matrix.gcc_v}}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: Set GFortran version
run: |
sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_V} 100 \
--slave /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_V}
- name: pFUnit build Cache
id: pfunit-cache
uses: actions/cache@v4
with:
path: ~/pfunit/build/installed
key: ${{ runner.os }}-ubuntu22.04-pfunit-gfortran${{ env.GCC_V }}-${{ hashFiles('dev_scripts/install_pfunit.sh') }}
save-always: true
- name: Download and build pFUnit
if: steps.pfunit-cache.outputs.cache-hit != 'true'
run: ./dev_scripts/install_pfunit.sh ${HOME}/pfunit
- name: build ABIN
run: ./configure --pfunit ${HOME}/pfunit/build/installed/ && make
env:
FFLAGS: ${{ env.OPTIMIZED_FFLAGS }}
- name: Run Unit tests
run: make unittest
- name: Run End-to-End tests
run: make e2etest
# Here we just take the defaults everywhere, except installing libfftw via apt
# To use FFTW with other Gfortran versions, we would need to build it.
fftw_build:
runs-on: ubuntu-22.04
name: FFTW build
needs: basic_build
env:
CODECOV_NAME: ${{format('{0}', github.job)}}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: Install FFTW libraries
run: sudo apt-get install libfftw3-dev
- name: pFUnit build Cache
id: pfunit-cache
uses: actions/cache@v4
with:
path: ~/pfunit/build/installed
key: ${{ runner.os }}-ubuntu22.04-pfunit-gfortran-default-${{ hashFiles('dev_scripts/install_pfunit.sh') }}
save-always: true
- name: Download and build pFUnit
if: steps.pfunit-cache.outputs.cache-hit != 'true'
run: ./dev_scripts/install_pfunit.sh ${HOME}/pfunit
- name: Build ABIN
run: ./configure --pfunit ${HOME}/pfunit/build/installed/ --fftw && make
env:
FFLAGS: ${{ env.ABIN_FFLAGS }}
LDLIBS: ${{ env.ABIN_LDLIBS }}
- name: Run Unit tests
run: make unittest
- name: Codecov upload unit tests
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
flags: unittests
- name: Run End-to-End tests
run: make e2etest
- name: Codecov upload
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
fail_ci_if_error: true
mpich_build:
name: MPICH build
runs-on: ubuntu-20.04
timeout-minutes: 25
needs: basic_build
strategy:
fail-fast: false
matrix:
gcc_v: [7, 10]
mpich_v: ["3.4.3", "4.0.2"]
env:
# To speed-up MPICH build
CFLAGS: -O0
GCC_V: ${{ matrix.gcc_v}}
MPICH_V: ${{matrix.mpich_v}}
CODECOV_NAME: ${{format('{0} GCC-{1} MPICH-{2}', github.job, matrix.gcc_v, matrix.mpich_v)}}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: Install GCC-7
if: matrix.gcc_v == 7
run: |
sudo apt install gcc-7 gfortran-7 g++-7
echo "ABIN_FFLAGS=${ABIN_FFLAGS/-fprofile-abs-path/}" >> $GITHUB_ENV
- name: Set GFortran version
run: |
sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_V} 100 \
--slave /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_V} \
--slave /usr/bin/gcov gcov /usr/bin/gcov-${GCC_V}
- name: MPICH build Cache
id: mpich-cache
uses: actions/cache@v4
with:
path: ~/mpich/${{ env.MPICH_V }}/install
key: ${{runner.os}}-ubuntu20.04-mpich${{ env.MPICH_V }}-gfortran${{ env.GCC_V }}-${{hashFiles('dev_scripts/install_mpich.sh')}}
save-always: true
- name: Build and Install MPICH
if: steps.mpich-cache.outputs.cache-hit != 'true'
# Without the extra "-fallow-argument-mismatch" FFLAG, configure with GFortran-10 fails with:
# "The Fortran compiler gfortran does not accept programs
# that call the same routine with arguments of different types"
# Unfortunately, previous GCC versions do not have this flag
# so we need to set it conditionally.
# MPICH 4.0 also needs FCFLAGS set.
# We also need to set it for ABIN compilation below.
run: |
if [ $GCC_V -ge 10 ];then export FFLAGS="-fallow-argument-mismatch";export FCFLAGS="-fallow-argument-mismatch";fi && \
./dev_scripts/install_mpich.sh ${HOME}/mpich ${MPICH_V}
- name: build ABIN
run: |
if [ $GCC_V -ge 10 ];then export FFLAGS="-fallow-argument-mismatch $FFLAGS";fi && \
./configure --mpi ${HOME}/mpich/${MPICH_V}/install && make
env:
FFLAGS: ${{ env.ABIN_FFLAGS }} -g
LDLIBS: ${{ env.ABIN_LDLIBS }}
- name: test ABIN
run: make test
- name: Codecov upload
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
fail_ci_if_error: true
openmpi_build:
name: OpenMPI build
runs-on: ubuntu-20.04
timeout-minutes: 25
needs: basic_build
strategy:
fail-fast: false
env:
# To speed-up OpenMPI build
CFLAGS: -O0
CODECOV_NAME: ${{format('{0} OpenMPI-4.0', github.job)}}
OPENMPI_V: "4.1"
OPENMPI_PATCH: "2"
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: OpenMPI build cache
id: openmpi-cache
uses: actions/cache@v4
with:
path: ~/openmpi/${{ env.OPENMPI_V }}/install
key: ${{runner.os}}-ubuntu20.04-openmpi${{ env.OPENMPI_V }}-gfortran-default-${{hashFiles('dev_scripts/install_openmpi.sh')}}
save-always: true
- name: Build and Install OpenMPI
if: steps.openmpi-cache.outputs.cache-hit != 'true'
run: ./dev_scripts/install_openmpi.sh ${HOME}/openmpi ${OPENMPI_V} ${OPENMPI_PATCH}
- name: build ABIN
run: ./configure --mpi "${HOME}/openmpi/${OPENMPI_V}/install" && make
env:
FFLAGS: ${{ env.ABIN_FFLAGS }}
LDLIBS: ${{ env.ABIN_LDLIBS }}
- name: test ABIN
run: make test
- name: Codecov upload
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
fail_ci_if_error: true
plumed_build:
name: PLUMED build
runs-on: ubuntu-20.04
needs: basic_build
strategy:
fail-fast: false
matrix:
plumed_v: [2.7.6, 2.8.2]
env:
PLUMED_V: ${{ matrix.plumed_v}}
# Speeding up the Plumed build
CFLAGS: -O0
CXXLAGS: -O0
CODECOV_NAME: ${{format('{0} PLUMED-{1}', github.job, matrix.plumed_v)}}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- name: Plumed build cache
id: plumed-cache
uses: actions/cache@v4
with:
path: ~/plumed/${{ env.PLUMED_V }}/install
key: ${{runner.os}}-ubuntu20.04-plumed${{env.PLUMED_V}}-gcc-default-${{hashFiles('dev_scripts/install_plumed.sh')}}
save-always: true
- name: Build and Install PLUMED
if: steps.plumed-cache.outputs.cache-hit != 'true'
run: ./dev_scripts/install_plumed.sh ${HOME}/plumed ${PLUMED_V}
- name: pFUnit build Cache
id: pfunit-cache
uses: actions/cache@v4
with:
path: ~/pfunit/build/installed
key: ${{ runner.os }}-ubuntu20.04-pfunit-gfortran-default-${{ hashFiles('dev_scripts/install_pfunit.sh') }}
- name: Download and build pFUnit
if: steps.pfunit-cache.outputs.cache-hit != 'true'
run: ./dev_scripts/install_pfunit.sh ${HOME}/pfunit
- name: build ABIN
run: |
./configure --plumed "${HOME}/plumed/${PLUMED_V}/install"\
--pfunit ~/pfunit/build/installed/ &&\
make
env:
FFLAGS: ${{ env.ABIN_FFLAGS }}
LDLIBS: ${{ env.ABIN_LDLIBS }}
- name: Run Unit tests
run: make unittest
- name: Codecov upload unit tests
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
flags: unittests
- name: Run End-to-End tests
run: make e2etest
- name: Codecov upload
uses: codecov/codecov-action@v4
with:
name: ${{env.CODECOV_NAME}}
fail_ci_if_error: true