From 2cbb18b3841ff07540ed0c75b10ceda4de7c6099 Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 08:00:57 -0500
Subject: [PATCH 1/8] chore(abt): upgrade python and dependencies

---
 analyses-snapshot-testing/Pipfile        |  24 +-
 analyses-snapshot-testing/Pipfile.lock   | 657 +++++++++++------------
 analyses-snapshot-testing/pyproject.toml |   4 +-
 3 files changed, 323 insertions(+), 362 deletions(-)

diff --git a/analyses-snapshot-testing/Pipfile b/analyses-snapshot-testing/Pipfile
index 43bb4dd2475..85a1d29c337 100644
--- a/analyses-snapshot-testing/Pipfile
+++ b/analyses-snapshot-testing/Pipfile
@@ -4,20 +4,18 @@ url = "https://pypi.org/simple"
 verify_ssl = true
 
 [packages]
-pytest = "==8.1.1"
-black = "==24.3.0"
-selenium = "==4.19.0"
-importlib-metadata = "==7.1.0"
-requests = "==2.31.0"
+pytest = "==8.3.3"
+black = "==24.10.0"
+importlib-metadata = "==8.5.0"
+httpx = "==0.27.2"
 python-dotenv = "==1.0.1"
-mypy = "==1.9.0"
-types-requests = "==2.31.0.20240311"
-rich = "==13.7.1"
-pydantic = "==2.6.4"
-ruff = "==0.3.4"
-docker = "==7.0.0"
-syrupy = "==4.6.1"
+mypy = "==1.11.2"
+rich = "==13.9.2"
+pydantic = "==2.9.2"
+ruff = "==0.6.9"
+docker = "==7.1.0"
+syrupy = "==4.7.2"
 pytest-html = "==4.1.1"
 
 [requires]
-python_version = "3.12"
+python_version = "3.13"
diff --git a/analyses-snapshot-testing/Pipfile.lock b/analyses-snapshot-testing/Pipfile.lock
index 0672556f9cd..648d065049c 100644
--- a/analyses-snapshot-testing/Pipfile.lock
+++ b/analyses-snapshot-testing/Pipfile.lock
@@ -1,11 +1,11 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "b7ac4510c6e3aa343c669e1bd838183e905abb6f1701c6efbfb1c22f20cfae44"
+            "sha256": "6657134003c472f3e25e7c91a6b1f46eb8231b4518c18c90c6353bcf2666923e"
         },
         "pipfile-spec": 6,
         "requires": {
-            "python_version": "3.12"
+            "python_version": "3.13"
         },
         "sources": [
             {
@@ -18,56 +18,56 @@
     "default": {
         "annotated-types": {
             "hashes": [
-                "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43",
-                "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"
+                "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53",
+                "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==0.6.0"
+            "version": "==0.7.0"
         },
-        "attrs": {
+        "anyio": {
             "hashes": [
-                "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30",
-                "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"
+                "sha256:137b4559cbb034c477165047febb6ff83f390fc3b20bf181c1fc0a728cb8beeb",
+                "sha256:c7d2e9d63e31599eeb636c8c5c03a7e108d73b345f064f1c19fdc87b79036a9a"
             ],
-            "markers": "python_version >= '3.7'",
-            "version": "==23.2.0"
+            "markers": "python_version >= '3.9'",
+            "version": "==4.6.0"
         },
         "black": {
             "hashes": [
-                "sha256:2818cf72dfd5d289e48f37ccfa08b460bf469e67fb7c4abb07edc2e9f16fb63f",
-                "sha256:41622020d7120e01d377f74249e677039d20e6344ff5851de8a10f11f513bf93",
-                "sha256:4acf672def7eb1725f41f38bf6bf425c8237248bb0804faa3965c036f7672d11",
-                "sha256:4be5bb28e090456adfc1255e03967fb67ca846a03be7aadf6249096100ee32d0",
-                "sha256:4f1373a7808a8f135b774039f61d59e4be7eb56b2513d3d2f02a8b9365b8a8a9",
-                "sha256:56f52cfbd3dabe2798d76dbdd299faa046a901041faf2cf33288bc4e6dae57b5",
-                "sha256:65b76c275e4c1c5ce6e9870911384bff5ca31ab63d19c76811cb1fb162678213",
-                "sha256:65c02e4ea2ae09d16314d30912a58ada9a5c4fdfedf9512d23326128ac08ac3d",
-                "sha256:6905238a754ceb7788a73f02b45637d820b2f5478b20fec82ea865e4f5d4d9f7",
-                "sha256:79dcf34b33e38ed1b17434693763301d7ccbd1c5860674a8f871bd15139e7837",
-                "sha256:7bb041dca0d784697af4646d3b62ba4a6b028276ae878e53f6b4f74ddd6db99f",
-                "sha256:7d5e026f8da0322b5662fa7a8e752b3fa2dac1c1cbc213c3d7ff9bdd0ab12395",
-                "sha256:9f50ea1132e2189d8dff0115ab75b65590a3e97de1e143795adb4ce317934995",
-                "sha256:a0c9c4a0771afc6919578cec71ce82a3e31e054904e7197deacbc9382671c41f",
-                "sha256:aadf7a02d947936ee418777e0247ea114f78aff0d0959461057cae8a04f20597",
-                "sha256:b5991d523eee14756f3c8d5df5231550ae8993e2286b8014e2fdea7156ed0959",
-                "sha256:bf21b7b230718a5f08bd32d5e4f1db7fc8788345c8aea1d155fc17852b3410f5",
-                "sha256:c45f8dff244b3c431b36e3224b6be4a127c6aca780853574c00faf99258041eb",
-                "sha256:c7ed6668cbbfcd231fa0dc1b137d3e40c04c7f786e626b405c62bcd5db5857e4",
-                "sha256:d7de8d330763c66663661a1ffd432274a2f92f07feeddd89ffd085b5744f85e7",
-                "sha256:e19cb1c6365fd6dc38a6eae2dcb691d7d83935c10215aef8e6c38edee3f77abd",
-                "sha256:e2af80566f43c85f5797365077fb64a393861a3730bd110971ab7a0c94e873e7"
+                "sha256:14b3502784f09ce2443830e3133dacf2c0110d45191ed470ecb04d0f5f6fcb0f",
+                "sha256:17374989640fbca88b6a448129cd1745c5eb8d9547b464f281b251dd00155ccd",
+                "sha256:1c536fcf674217e87b8cc3657b81809d3c085d7bf3ef262ead700da345bfa6ea",
+                "sha256:1cbacacb19e922a1d75ef2b6ccaefcd6e93a2c05ede32f06a21386a04cedb981",
+                "sha256:1f93102e0c5bb3907451063e08b9876dbeac810e7da5a8bfb7aeb5a9ef89066b",
+                "sha256:2cd9c95431d94adc56600710f8813ee27eea544dd118d45896bb734e9d7a0dc7",
+                "sha256:30d2c30dc5139211dda799758559d1b049f7f14c580c409d6ad925b74a4208a8",
+                "sha256:394d4ddc64782e51153eadcaaca95144ac4c35e27ef9b0a42e121ae7e57a9175",
+                "sha256:3bb2b7a1f7b685f85b11fed1ef10f8a9148bceb49853e47a294a3dd963c1dd7d",
+                "sha256:4007b1393d902b48b36958a216c20c4482f601569d19ed1df294a496eb366392",
+                "sha256:5a2221696a8224e335c28816a9d331a6c2ae15a2ee34ec857dcf3e45dbfa99ad",
+                "sha256:63f626344343083322233f175aaf372d326de8436f5928c042639a4afbbf1d3f",
+                "sha256:649fff99a20bd06c6f727d2a27f401331dc0cc861fb69cde910fe95b01b5928f",
+                "sha256:680359d932801c76d2e9c9068d05c6b107f2584b2a5b88831c83962eb9984c1b",
+                "sha256:846ea64c97afe3bc677b761787993be4991810ecc7a4a937816dd6bddedc4875",
+                "sha256:b5e39e0fae001df40f95bd8cc36b9165c5e2ea88900167bddf258bacef9bbdc3",
+                "sha256:ccfa1d0cb6200857f1923b602f978386a3a2758a65b52e0950299ea014be6800",
+                "sha256:d37d422772111794b26757c5b55a3eade028aa3fde43121ab7b673d050949d65",
+                "sha256:ddacb691cdcdf77b96f549cf9591701d8db36b2f19519373d60d31746068dbf2",
+                "sha256:e6668650ea4b685440857138e5fe40cde4d652633b1bdffc62933d0db4ed9812",
+                "sha256:f9da3333530dbcecc1be13e69c250ed8dfa67f43c4005fb537bb426e19200d50",
+                "sha256:fe4d6476887de70546212c99ac9bd803d90b42fc4767f058a0baa895013fbb3e"
             ],
             "index": "pypi",
-            "markers": "python_version >= '3.8'",
-            "version": "==24.3.0"
+            "markers": "python_version >= '3.9'",
+            "version": "==24.10.0"
         },
         "certifi": {
             "hashes": [
-                "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f",
-                "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"
+                "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8",
+                "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"
             ],
             "markers": "python_version >= '3.6'",
-            "version": "==2024.2.2"
+            "version": "==2024.8.30"
         },
         "charset-normalizer": {
             "hashes": [
@@ -175,12 +175,12 @@
         },
         "docker": {
             "hashes": [
-                "sha256:12ba681f2777a0ad28ffbcc846a69c31b4dfd9752b47eb425a274ee269c5e14b",
-                "sha256:323736fb92cd9418fc5e7133bc953e11a9da04f4483f828b527db553f1e7e5a3"
+                "sha256:ad8c70e6e3f8926cb8a92619b832b4ea5299e2831c14284663184e200546fa6c",
+                "sha256:c96b93b7f0a746f9e77d325bcfb87422a3d8bd4f03136ae8a85b37f1898d5fc0"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==7.0.0"
+            "version": "==7.1.0"
         },
         "h11": {
             "hashes": [
@@ -190,22 +190,39 @@
             "markers": "python_version >= '3.7'",
             "version": "==0.14.0"
         },
+        "httpcore": {
+            "hashes": [
+                "sha256:27b59625743b85577a8c0e10e55b50b5368a4f2cfe8cc7bcfa9cf00829c2682f",
+                "sha256:73f6dbd6eb8c21bbf7ef8efad555481853f5f6acdeaff1edb0694289269ee17f"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==1.0.6"
+        },
+        "httpx": {
+            "hashes": [
+                "sha256:7bb2708e112d8fdd7829cd4243970f0c223274051cb35ee80c03301ee29a3df0",
+                "sha256:f7c2be1d2f3c3c3160d441802406b206c2b76f5947b11115e6df10c6c65e66c2"
+            ],
+            "index": "pypi",
+            "markers": "python_version >= '3.8'",
+            "version": "==0.27.2"
+        },
         "idna": {
             "hashes": [
-                "sha256:9ecdbbd083b06798ae1e86adcbfe8ab1479cf864e4ee30fe4e46a003d12491ca",
-                "sha256:c05567e9c24a6b9faaa835c4821bad0590fbb9d5779e7caa6e1cc4978e7eb24f"
+                "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9",
+                "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"
             ],
-            "markers": "python_version >= '3.5'",
-            "version": "==3.6"
+            "markers": "python_version >= '3.6'",
+            "version": "==3.10"
         },
         "importlib-metadata": {
             "hashes": [
-                "sha256:30962b96c0c223483ed6cc7280e7f0199feb01a0e40cfae4d4450fc6fab1f570",
-                "sha256:b78938b926ee8d5f020fc4772d487045805a55ddbad2ecf21c6d60938dc7fcd2"
+                "sha256:45e54197d28b7a7f1559e60b95e7c567032b602131fbd588f1497f47880aa68b",
+                "sha256:71522656f0abace1d072b9e5481a48f07c138e00f079c38c8f883823f9c26bd7"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==7.1.0"
+            "version": "==8.5.0"
         },
         "iniconfig": {
             "hashes": [
@@ -217,11 +234,11 @@
         },
         "jinja2": {
             "hashes": [
-                "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa",
-                "sha256:ac8bd6544d4bb2c9792bf3a159e80bba8fda7f07e81bc3aed565432d5925ba90"
+                "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369",
+                "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==3.1.3"
+            "version": "==3.1.4"
         },
         "markdown-it-py": {
             "hashes": [
@@ -233,69 +250,70 @@
         },
         "markupsafe": {
             "hashes": [
-                "sha256:00e046b6dd71aa03a41079792f8473dc494d564611a8f89bbbd7cb93295ebdcf",
-                "sha256:075202fa5b72c86ad32dc7d0b56024ebdbcf2048c0ba09f1cde31bfdd57bcfff",
-                "sha256:0e397ac966fdf721b2c528cf028494e86172b4feba51d65f81ffd65c63798f3f",
-                "sha256:17b950fccb810b3293638215058e432159d2b71005c74371d784862b7e4683f3",
-                "sha256:1f3fbcb7ef1f16e48246f704ab79d79da8a46891e2da03f8783a5b6fa41a9532",
-                "sha256:2174c595a0d73a3080ca3257b40096db99799265e1c27cc5a610743acd86d62f",
-                "sha256:2b7c57a4dfc4f16f7142221afe5ba4e093e09e728ca65c51f5620c9aaeb9a617",
-                "sha256:2d2d793e36e230fd32babe143b04cec8a8b3eb8a3122d2aceb4a371e6b09b8df",
-                "sha256:30b600cf0a7ac9234b2638fbc0fb6158ba5bdcdf46aeb631ead21248b9affbc4",
-                "sha256:397081c1a0bfb5124355710fe79478cdbeb39626492b15d399526ae53422b906",
-                "sha256:3a57fdd7ce31c7ff06cdfbf31dafa96cc533c21e443d57f5b1ecc6cdc668ec7f",
-                "sha256:3c6b973f22eb18a789b1460b4b91bf04ae3f0c4234a0a6aa6b0a92f6f7b951d4",
-                "sha256:3e53af139f8579a6d5f7b76549125f0d94d7e630761a2111bc431fd820e163b8",
-                "sha256:4096e9de5c6fdf43fb4f04c26fb114f61ef0bf2e5604b6ee3019d51b69e8c371",
-                "sha256:4275d846e41ecefa46e2015117a9f491e57a71ddd59bbead77e904dc02b1bed2",
-                "sha256:4c31f53cdae6ecfa91a77820e8b151dba54ab528ba65dfd235c80b086d68a465",
-                "sha256:4f11aa001c540f62c6166c7726f71f7573b52c68c31f014c25cc7901deea0b52",
-                "sha256:5049256f536511ee3f7e1b3f87d1d1209d327e818e6ae1365e8653d7e3abb6a6",
-                "sha256:58c98fee265677f63a4385256a6d7683ab1832f3ddd1e66fe948d5880c21a169",
-                "sha256:598e3276b64aff0e7b3451b72e94fa3c238d452e7ddcd893c3ab324717456bad",
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-                "sha256:619bc166c4f2de5caa5a633b8b7326fbe98e0ccbfacabd87268a2b15ff73a029",
-                "sha256:629ddd2ca402ae6dbedfceeba9c46d5f7b2a61d9749597d4307f943ef198fc1f",
-                "sha256:656f7526c69fac7f600bd1f400991cc282b417d17539a1b228617081106feb4a",
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-                "sha256:8dec4936e9c3100156f8a2dc89c4b88d5c435175ff03413b443469c7c8c5f4d1",
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-                "sha256:ac07bad82163452a6884fe8fa0963fb98c2346ba78d779ec06bd7a6262132aee",
-                "sha256:ae2ad8ae6ebee9d2d94b17fb62763125f3f374c25618198f40cbb8b525411900",
-                "sha256:b91c037585eba9095565a3556f611e3cbfaa42ca1e865f7b8015fe5c7336d5a5",
-                "sha256:bc1667f8b83f48511b94671e0e441401371dfd0f0a795c7daa4a3cd1dde55bea",
-                "sha256:bec0a414d016ac1a18862a519e54b2fd0fc8bbfd6890376898a6c0891dd82e9f",
-                "sha256:bf50cd79a75d181c9181df03572cdce0fbb75cc353bc350712073108cba98de5",
-                "sha256:bff1b4290a66b490a2f4719358c0cdcd9bafb6b8f061e45c7a2460866bf50c2e",
-                "sha256:c061bb86a71b42465156a3ee7bd58c8c2ceacdbeb95d05a99893e08b8467359a",
-                "sha256:c8b29db45f8fe46ad280a7294f5c3ec36dbac9491f2d1c17345be8e69cc5928f",
-                "sha256:ce409136744f6521e39fd8e2a24c53fa18ad67aa5bc7c2cf83645cce5b5c4e50",
-                "sha256:d050b3361367a06d752db6ead6e7edeb0009be66bc3bae0ee9d97fb326badc2a",
-                "sha256:d283d37a890ba4c1ae73ffadf8046435c76e7bc2247bbb63c00bd1a709c6544b",
-                "sha256:d9fad5155d72433c921b782e58892377c44bd6252b5af2f67f16b194987338a4",
-                "sha256:daa4ee5a243f0f20d528d939d06670a298dd39b1ad5f8a72a4275124a7819eff",
-                "sha256:db0b55e0f3cc0be60c1f19efdde9a637c32740486004f20d1cff53c3c0ece4d2",
-                "sha256:e61659ba32cf2cf1481e575d0462554625196a1f2fc06a1c777d3f48e8865d46",
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@@ -307,37 +325,37 @@
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@@ -347,21 +365,13 @@
             "markers": "python_version >= '3.5'",
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@@ -373,138 +383,140 @@
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-                "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"
+                "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760",
+                "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"
             ],
-            "index": "pypi",
-            "markers": "python_version >= '3.7'",
-            "version": "==2.31.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==2.32.3"
         },
         "rich": {
             "hashes": [
-                "sha256:4edbae314f59eb482f54e9e30bf00d33350aaa94f4bfcd4e9e3110e64d0d7222",
-                "sha256:9be308cb1fe2f1f57d67ce99e95af38a1e2bc71ad9813b0e247cf7ffbcc3a432"
+                "sha256:51a2c62057461aaf7152b4d611168f93a9fc73068f8ded2790f29fe2b5366d0c",
+                "sha256:8c82a3d3f8dcfe9e734771313e606b39d8247bb6b826e196f4914b333b743cf1"
             ],
             "index": "pypi",
-            "markers": "python_full_version >= '3.7.0'",
-            "version": "==13.7.1"
+            "markers": "python_full_version >= '3.8.0'",
+            "version": "==13.9.2"
         },
         "ruff": {
             "hashes": [
-                "sha256:3f3860057590e810c7ffea75669bdc6927bfd91e29b4baa9258fd48b540a4365",
-                "sha256:519cf6a0ebed244dce1dc8aecd3dc99add7a2ee15bb68cf19588bb5bf58e0488",
-                "sha256:60c870a7d46efcbc8385d27ec07fe534ac32f3b251e4fc44b3cbfd9e09609ef4",
-                "sha256:64abeed785dad51801b423fa51840b1764b35d6c461ea8caef9cf9e5e5ab34d9",
-                "sha256:6810563cc08ad0096b57c717bd78aeac888a1bfd38654d9113cb3dc4d3f74232",
-                "sha256:6fc14fa742e1d8f24910e1fff0bd5e26d395b0e0e04cc1b15c7c5e5fe5b4af91",
-                "sha256:986f2377f7cf12efac1f515fc1a5b753c000ed1e0a6de96747cdf2da20a1b369",
-                "sha256:98e98300056445ba2cc27d0b325fd044dc17fcc38e4e4d2c7711585bd0a958ed",
-                "sha256:af27ac187c0a331e8ef91d84bf1c3c6a5dea97e912a7560ac0cef25c526a4102",
-                "sha256:bb0acfb921030d00070539c038cd24bb1df73a2981e9f55942514af8b17be94e",
-                "sha256:c4fd98e85869603e65f554fdc5cddf0712e352fe6e61d29d5a6fe087ec82b76c",
-                "sha256:cf133dd744f2470b347f602452a88e70dadfbe0fcfb5fd46e093d55da65f82f7",
-                "sha256:cf187a7e7098233d0d0c71175375c5162f880126c4c716fa28a8ac418dcf3378",
-                "sha256:d3ee7880f653cc03749a3bfea720cf2a192e4f884925b0cf7eecce82f0ce5854",
-                "sha256:de0d5069b165e5a32b3c6ffbb81c350b1e3d3483347196ffdf86dc0ef9e37dd6",
-                "sha256:df52972138318bc7546d92348a1ee58449bc3f9eaf0db278906eb511889c4b50",
-                "sha256:f0f4484c6541a99862b693e13a151435a279b271cff20e37101116a21e2a1ad1"
+                "sha256:064df58d84ccc0ac0fcd63bc3090b251d90e2a372558c0f057c3f75ed73e1ccd",
+                "sha256:12edd2af0c60fa61ff31cefb90aef4288ac4d372b4962c2864aeea3a1a2460c0",
+                "sha256:140d4b5c9f5fc7a7b074908a78ab8d384dd7f6510402267bc76c37195c02a7ec",
+                "sha256:3c866b631f5fbce896a74a6e4383407ba7507b815ccc52bcedabb6810fdb3ef7",
+                "sha256:3ef0cc774b00fec123f635ce5c547dac263f6ee9fb9cc83437c5904183b55ceb",
+                "sha256:417b81aa1c9b60b2f8edc463c58363075412866ae4e2b9ab0f690dc1e87ac1b5",
+                "sha256:53fd8ca5e82bdee8da7f506d7b03a261f24cd43d090ea9db9a1dc59d9313914c",
+                "sha256:55bb01caeaf3a60b2b2bba07308a02fca6ab56233302406ed5245180a05c5625",
+                "sha256:645d7d8761f915e48a00d4ecc3686969761df69fb561dd914a773c1a8266e14e",
+                "sha256:785d31851c1ae91f45b3d8fe23b8ae4b5170089021fbb42402d811135f0b7117",
+                "sha256:7b118afbb3202f5911486ad52da86d1d52305b59e7ef2031cea3425142b97d6f",
+                "sha256:7d5ccc9e58112441de8ad4b29dcb7a86dc25c5f770e3c06a9d57e0e5eba48829",
+                "sha256:925d26471fa24b0ce5a6cdfab1bb526fb4159952385f386bdcc643813d472039",
+                "sha256:a67267654edc23c97335586774790cde402fb6bbdb3c2314f1fc087dee320bfa",
+                "sha256:a9641e31476d601f83cd602608739a0840e348bda93fec9f1ee816f8b6798b93",
+                "sha256:b076ef717a8e5bc819514ee1d602bbdca5b4420ae13a9cf61a0c0a4f53a2baa2",
+                "sha256:eae02b700763e3847595b9d2891488989cac00214da7f845f4bcf2989007d577",
+                "sha256:eb61ec9bdb2506cffd492e05ac40e5bc6284873aceb605503d8494180d6fc84d"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.7'",
-            "version": "==0.3.4"
-        },
-        "selenium": {
-            "hashes": [
-                "sha256:5b4f49240d61e687a73f7968ae2517d403882aae3550eae2a229c745e619f1d9",
-                "sha256:d9dfd6d0b021d71d0a48b865fe7746490ba82b81e9c87b212360006629eb1853"
-            ],
-            "index": "pypi",
-            "markers": "python_version >= '3.8'",
-            "version": "==4.19.0"
+            "version": "==0.6.9"
         },
         "sniffio": {
             "hashes": [
@@ -591,81 +594,41 @@
             "markers": "python_version >= '3.7'",
             "version": "==1.3.1"
         },
-        "sortedcontainers": {
-            "hashes": [
-                "sha256:25caa5a06cc30b6b83d11423433f65d1f9d76c4c6a0c90e3379eaa43b9bfdb88",
-                "sha256:a163dcaede0f1c021485e957a39245190e74249897e2ae4b2aa38595db237ee0"
-            ],
-            "version": "==2.4.0"
-        },
         "syrupy": {
             "hashes": [
-                "sha256:203e52f9cb9fa749cf683f29bd68f02c16c3bc7e7e5fe8f2fc59bdfe488ce133",
-                "sha256:37a835c9ce7857eeef86d62145885e10b3cb9615bc6abeb4ce404b3f18e1bb36"
+                "sha256:ea45e099f242de1bb53018c238f408a5bb6c82007bc687aefcbeaa0e1c2e935a",
+                "sha256:eae7ba6be5aed190237caa93be288e97ca1eec5ca58760e4818972a10c4acc64"
             ],
             "index": "pypi",
-            "markers": "python_version < '4' and python_full_version >= '3.8.1'",
-            "version": "==4.6.1"
-        },
-        "trio": {
-            "hashes": [
-                "sha256:9b41f5993ad2c0e5f62d0acca320ec657fdb6b2a2c22b8c7aed6caf154475c4e",
-                "sha256:e6458efe29cc543e557a91e614e2b51710eba2961669329ce9c862d50c6e8e81"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==0.25.0"
-        },
-        "trio-websocket": {
-            "hashes": [
-                "sha256:18c11793647703c158b1f6e62de638acada927344d534e3c7628eedcb746839f",
-                "sha256:520d046b0d030cf970b8b2b2e00c4c2245b3807853ecd44214acd33d74581638"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==0.11.1"
-        },
-        "types-requests": {
-            "hashes": [
-                "sha256:47872893d65a38e282ee9f277a4ee50d1b28bd592040df7d1fdaffdf3779937d",
-                "sha256:b1c1b66abfb7fa79aae09097a811c4aa97130eb8831c60e47aee4ca344731ca5"
-            ],
-            "index": "pypi",
-            "markers": "python_version >= '3.8'",
-            "version": "==2.31.0.20240311"
+            "markers": "python_full_version >= '3.8.1'",
+            "version": "==4.7.2"
         },
         "typing-extensions": {
             "hashes": [
-                "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475",
-                "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"
+                "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d",
+                "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"
             ],
-            "markers": "python_version >= '3.8'",
-            "version": "==4.10.0"
+            "markers": "python_version >= '3.13'",
+            "version": "==4.12.2"
         },
         "urllib3": {
             "extras": [
                 "socks"
             ],
             "hashes": [
-                "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d",
-                "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"
+                "sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac",
+                "sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2.2.1"
-        },
-        "wsproto": {
-            "hashes": [
-                "sha256:ad565f26ecb92588a3e43bc3d96164de84cd9902482b130d0ddbaa9664a85065",
-                "sha256:b9acddd652b585d75b20477888c56642fdade28bdfd3579aa24a4d2c037dd736"
-            ],
-            "markers": "python_full_version >= '3.7.0'",
-            "version": "==1.2.0"
+            "version": "==2.2.3"
         },
         "zipp": {
             "hashes": [
-                "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b",
-                "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"
+                "sha256:a817ac80d6cf4b23bf7f2828b7cabf326f15a001bea8b1f9b49631780ba28350",
+                "sha256:bc9eb26f4506fda01b81bcde0ca78103b6e62f991b381fec825435c836edbc29"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==3.18.1"
+            "version": "==3.20.2"
         }
     },
     "develop": {}
diff --git a/analyses-snapshot-testing/pyproject.toml b/analyses-snapshot-testing/pyproject.toml
index 4d4c9cf166c..9ea01a884cb 100644
--- a/analyses-snapshot-testing/pyproject.toml
+++ b/analyses-snapshot-testing/pyproject.toml
@@ -1,13 +1,13 @@
 [tool.black]
 line-length = 140
-target-version = ['py312']
+target-version = ['py313']
 
 [tool.ruff]
 # Like Black
 line-length = 140
 # Like Black
 indent-width = 4
-target-version = "py312"
+target-version = "py313"
 exclude = ["files"]
 src = ["*.py", "automation", "tests", "citools"]
 

From e8c83600c8220f6fcd7779fd600bd8cfb11e6841 Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 08:26:23 -0500
Subject: [PATCH 2/8] chore(abt): upgrade workflows

---
 .github/workflows/analyses-snapshot-lint.yaml |  2 +-
 .github/workflows/analyses-snapshot-test.yaml | 12 ++++++------
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/analyses-snapshot-lint.yaml b/.github/workflows/analyses-snapshot-lint.yaml
index 90724f3c7a2..b8713cfa858 100644
--- a/.github/workflows/analyses-snapshot-lint.yaml
+++ b/.github/workflows/analyses-snapshot-lint.yaml
@@ -27,7 +27,7 @@ jobs:
       - name: Setup Python
         uses: 'actions/setup-python@v5'
         with:
-          python-version: '3.12'
+          python-version: '3.13'
           cache: 'pipenv'
           cache-dependency-path: analyses-snapshot-testing/Pipfile.lock
       - name: Setup
diff --git a/.github/workflows/analyses-snapshot-test.yaml b/.github/workflows/analyses-snapshot-test.yaml
index 26576899188..e7ed6d2dfac 100644
--- a/.github/workflows/analyses-snapshot-test.yaml
+++ b/.github/workflows/analyses-snapshot-test.yaml
@@ -48,8 +48,8 @@ jobs:
       ANALYSIS_REF: ${{ github.event.inputs.ANALYSIS_REF || github.head_ref || 'edge' }}
       SNAPSHOT_REF: ${{ github.event.inputs.SNAPSHOT_REF || github.head_ref || 'edge' }}
       # If we're running because of workflow_dispatch, use the user input to decide
-      # whether to open a PR on failure. Otherwise, there is no user input, so always
-      # open a PR on failure.
+      # whether to open a PR on failure. Otherwise, there is no user input,
+      # so we only open a PR if the PR has the label 'gen-analyses-snapshot-pr'
       OPEN_PR_ON_FAILURE: ${{ (github.event_name == 'workflow_dispatch' && github.events.inputs.OPEN_PR_ON_FAILURE) || ((github.event_name != 'workflow_dispatch') && (contains(github.event.pull_request.labels.*.name, 'gen-analyses-snapshot-pr'))) }}
       PR_TARGET_BRANCH: ${{ github.event.pull_request.base.ref || 'not a pr'}}
     steps:
@@ -75,10 +75,10 @@ jobs:
         working-directory: analyses-snapshot-testing
         run: make build-opentrons-analysis
 
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: '3.12'
+          python-version: '3.13'
           cache: 'pipenv'
           cache-dependency-path: analyses-snapshot-testing/Pipfile.lock
 
@@ -107,7 +107,7 @@ jobs:
       - name: Create Snapshot update Request
         id: create_pull_request
         if: always() && steps.handle_failure.outcome == 'success' && env.OPEN_PR_ON_FAILURE == 'true' && github.event_name == 'pull_request'
-        uses: peter-evans/create-pull-request@v6
+        uses: peter-evans/create-pull-request@v7
         with:
           commit-message: 'fix(analyses-snapshot-testing): heal analyses snapshots'
           title: 'fix(analyses-snapshot-testing): heal ${{ env.ANALYSIS_REF }} snapshots'
@@ -130,7 +130,7 @@ jobs:
 
       - name: Create Snapshot update Request on edge overnight failure
         if: always() && steps.handle_failure.outcome == 'success' && github.event_name == 'schedule'
-        uses: peter-evans/create-pull-request@v6
+        uses: peter-evans/create-pull-request@v7
         with: # scheduled run uses the default values for ANALYSIS_REF and SNAPSHOT_REF which are edge
           commit-message: 'fix(analyses-snapshot-testing): heal ${{ env.ANALYSIS_REF }} snapshots'
           title: 'fix(analyses-snapshot-testing): heal ${{ env.ANALYSIS_REF }} snapshots'

From cf3457b423d4da70cb1dba4ef8dd3fb74b464615 Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 08:34:49 -0500
Subject: [PATCH 3/8] use 3.13.0-rc.3 for now

---
 .github/workflows/analyses-snapshot-lint.yaml | 2 +-
 .github/workflows/analyses-snapshot-test.yaml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/analyses-snapshot-lint.yaml b/.github/workflows/analyses-snapshot-lint.yaml
index b8713cfa858..17e13e30868 100644
--- a/.github/workflows/analyses-snapshot-lint.yaml
+++ b/.github/workflows/analyses-snapshot-lint.yaml
@@ -27,7 +27,7 @@ jobs:
       - name: Setup Python
         uses: 'actions/setup-python@v5'
         with:
-          python-version: '3.13'
+          python-version: '3.13.0-rc.3'
           cache: 'pipenv'
           cache-dependency-path: analyses-snapshot-testing/Pipfile.lock
       - name: Setup
diff --git a/.github/workflows/analyses-snapshot-test.yaml b/.github/workflows/analyses-snapshot-test.yaml
index e7ed6d2dfac..7770db0d286 100644
--- a/.github/workflows/analyses-snapshot-test.yaml
+++ b/.github/workflows/analyses-snapshot-test.yaml
@@ -78,7 +78,7 @@ jobs:
       - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: '3.13'
+          python-version: '3.13.0-rc.3'
           cache: 'pipenv'
           cache-dependency-path: analyses-snapshot-testing/Pipfile.lock
 

From f2a32db630d592bd07ea50494f9808c29784079d Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 09:55:45 -0500
Subject: [PATCH 4/8] feat(abt): analyze protocols faster

---
 .../citools/generate_analyses.py              | 304 ++++++------------
 1 file changed, 96 insertions(+), 208 deletions(-)

diff --git a/analyses-snapshot-testing/citools/generate_analyses.py b/analyses-snapshot-testing/citools/generate_analyses.py
index f1335b102ae..a6ce27c399d 100644
--- a/analyses-snapshot-testing/citools/generate_analyses.py
+++ b/analyses-snapshot-testing/citools/generate_analyses.py
@@ -1,13 +1,13 @@
+import concurrent
 import json
 import os
-import signal
 import time
-from contextlib import contextmanager
+from concurrent.futures import ThreadPoolExecutor
 from dataclasses import dataclass
 from datetime import datetime, timezone
 from enum import Enum, auto
 from pathlib import Path
-from typing import Any, Dict, Generator, List, Optional
+from typing import Any, Dict, List, Optional
 
 import docker  # type: ignore
 from automation.data.protocol import Protocol
@@ -15,40 +15,27 @@
 from rich.traceback import install
 
 install(show_locals=True)
-IMAGE = "opentrons-analysis"
-CONTAINER_LABWARE = "/var/lib/ot"
-HOST_LABWARE = Path(Path(__file__).parent.parent, "files", "labware")
-HOST_PROTOCOLS_ROOT = Path(Path(__file__).parent.parent, "files", "protocols")
-CONTAINER_PROTOCOLS_ROOT = "/var/lib/ot/protocols"
-CONTAINER_RESULTS = "/var/lib/ot/analysis_results"
-HOST_RESULTS = Path(Path(__file__).parent.parent, "analysis_results")
-ANALYSIS_SUFFIX = "analysis.json"
+IMAGE: str = "opentrons-analysis"
+CONTAINER_LABWARE: str = "/var/lib/ot"
+HOST_LABWARE: Path = Path(Path(__file__).parent.parent, "files", "labware")
+HOST_PROTOCOLS_ROOT: Path = Path(Path(__file__).parent.parent, "files", "protocols")
+CONTAINER_PROTOCOLS_ROOT: str = "/var/lib/ot/protocols"
+CONTAINER_RESULTS: str = "/var/lib/ot/analysis_results"
+HOST_RESULTS: Path = Path(Path(__file__).parent.parent, "analysis_results")
+ANALYSIS_SUFFIX: str = "analysis.json"
+ANALYSIS_TIMEOUT_SECONDS: int = 30
+ANALYSIS_CONTAINER_INSTANCES: int = 6
 
 console = Console()
 
 
-@contextmanager
-def timeout(seconds: int) -> Generator[None, None, None]:
-    # Signal handler function
-    def raise_timeout(signum, frame) -> None:  # type: ignore[no-untyped-def]
-        raise TimeoutError
-
-    # Set the signal handler for the alarm signal
-    signal.signal(signal.SIGALRM, raise_timeout)
-    signal.alarm(seconds)  # Set the alarm
-    try:
-        yield
-    finally:
-        signal.alarm(0)  # Disable the alarm
-
-
 class ProtocolType(Enum):
     PROTOCOL_DESIGNER = auto()
     PYTHON = auto()
 
 
 @dataclass
-class AnalyzedProtocol:
+class TargetProtocol:
     host_protocol_file: Path
     container_protocol_file: Path
     host_analysis_file: Path
@@ -111,7 +98,7 @@ def set_analysis_execution_time(self, analysis_execution_time: float) -> None:
         self.analysis_execution_time = analysis_execution_time
 
 
-def stop_and_restart_container(image_name: str, timeout: int = 60) -> docker.models.containers.Container:
+def start_containers(image_name: str, num_containers: int, timeout: int = 60) -> List[docker.models.containers.Container]:
     client = docker.from_env()
     volumes = {
         str(HOST_LABWARE): {"bind": CONTAINER_LABWARE, "mode": "rw"},
@@ -119,64 +106,55 @@ def stop_and_restart_container(image_name: str, timeout: int = 60) -> docker.mod
         str(HOST_PROTOCOLS_ROOT): {"bind": CONTAINER_PROTOCOLS_ROOT, "mode": "rw"},
     }
 
-    # Find the running container using the specified image
-    containers = client.containers.list(filters={"ancestor": image_name, "status": "running"})
-
+    # Stop and remove existing containers
+    containers: List[docker.models.containers.Container] = client.containers.list(filters={"ancestor": image_name})
     if containers:
-        console.print("Stopping the running container(s)...")
+        console.print("Stopping and removing existing container(s)...")
         for container in containers:
             container.stop(timeout=10)
+            container.remove()
 
-    # Start a new container with the specified volume
-    console.print("Starting a new container.")
-    container = client.containers.run(image_name, detach=True, volumes=volumes)
+    # Start new containers
+    console.print(f"Starting {num_containers} new container(s).")
+    containers = []
+    for _ in range(num_containers):
+        container = client.containers.run(image_name, detach=True, volumes=volumes)
+        containers.append(container)
 
-    # Wait for the container to be ready if a readiness command is provided
+    # Wait for containers to be ready
     start_time = time.time()
     while time.time() - start_time < timeout:
-        exit_code, output = container.exec_run(f"ls -al {CONTAINER_LABWARE}")
-        if exit_code == 0:
-            console.print("Container is ready.")
+        all_ready = True
+        for container in containers:
+            exit_code, _ = container.exec_run(f"ls -al {CONTAINER_LABWARE}")
+            if exit_code != 0:
+                all_ready = False
+                break
+        if all_ready:
+            console.print("All containers are ready.")
             break
         else:
-            console.print("Waiting for container to be ready...")
-        time.sleep(5)
+            console.print("Waiting for containers to be ready...")
+            time.sleep(5)
     else:
-        console.print("Timeout waiting for container to be ready. Proceeding anyway.")
-    return container
+        console.print("Timeout waiting for containers to be ready. Proceeding anyway.")
+    return containers
 
 
 def stop_and_remove_containers(image_name: str) -> None:
     client = docker.from_env()
-
-    # Find all containers created from the specified image
     containers = client.containers.list(all=True, filters={"ancestor": image_name})
-
     for container in containers:
         try:
-            # Stop the container if it's running
             if container.status == "running":
                 console.print(f"Stopping container {container.short_id}...")
                 container.stop(timeout=10)
-
-            # Remove the container
             console.print(f"Removing container {container.short_id}...")
             container.remove()
-        except docker.errors.ContainerError as e:
+        except Exception as e:
             console.print(f"Error stopping/removing container {container.short_id}: {e}")
 
 
-def has_designer_application(json_file_path: Path) -> bool:
-    try:
-        with open(json_file_path, "r", encoding="utf-8") as file:
-            data = json.load(file)
-            return "designerApplication" in data
-    except json.JSONDecodeError:
-        # Handle the exception if the file is not a valid JSON
-        console.print(f"Invalid JSON file: {json_file_path}")
-        return False
-
-
 def host_analysis_path(protocol_file: Path, tag: str) -> Path:
     return Path(HOST_RESULTS, f"{protocol_file.stem}_{tag}_{ANALYSIS_SUFFIX}")
 
@@ -185,79 +163,6 @@ def container_analysis_path(protocol_file: Path, tag: str) -> Path:
     return Path(CONTAINER_RESULTS, f"{protocol_file.stem}_{tag}_{ANALYSIS_SUFFIX}")
 
 
-def generate_protocols(tag: str) -> List[AnalyzedProtocol]:
-
-    # Since we do not have the specification for which labware to use
-    # we will use all labware in the host labware directory
-    all_custom_labware_paths = [str(host_path.relative_to(CONTAINER_LABWARE)) for host_path in list(Path(HOST_LABWARE).rglob("*.json"))]
-
-    def find_pd_protocols() -> List[AnalyzedProtocol]:
-        # Check if the provided path is a valid directory
-        if not HOST_PROTOCOLS_ROOT.is_dir():
-            raise NotADirectoryError(f"The path {HOST_PROTOCOLS_ROOT} is not a valid directory.")
-
-        nonlocal all_custom_labware_paths
-
-        # Recursively find all .json files
-        json_files = list(HOST_PROTOCOLS_ROOT.rglob("*.json"))
-        filtered_json_files = [file for file in json_files if has_designer_application(file)]
-        pd_protocols: List[AnalyzedProtocol] = []
-        for path in filtered_json_files:
-            relative_path = path.relative_to(HOST_PROTOCOLS_ROOT)
-            updated_path = Path(CONTAINER_PROTOCOLS_ROOT, relative_path)
-            pd_protocols.append(
-                AnalyzedProtocol(
-                    host_protocol_file=path,
-                    container_protocol_file=updated_path,
-                    host_analysis_file=host_analysis_path(path, tag),
-                    container_analysis_file=container_analysis_path(path, tag),
-                    tag=tag,
-                    custom_labware_paths=all_custom_labware_paths,
-                )
-            )
-        return pd_protocols
-
-    def find_python_protocols() -> List[AnalyzedProtocol]:
-        # Check if the provided path is a valid directory
-        if not HOST_PROTOCOLS_ROOT.is_dir():
-            raise NotADirectoryError(f"The path {HOST_PROTOCOLS_ROOT} is not a valid directory.")
-
-        nonlocal all_custom_labware_paths
-
-        # Recursively find all .py files
-        python_files = list(HOST_PROTOCOLS_ROOT.rglob("*.py"))
-        py_protocols: List[AnalyzedProtocol] = []
-
-        for path in python_files:
-            relative_path = path.relative_to(HOST_PROTOCOLS_ROOT)
-            container_path = Path(CONTAINER_PROTOCOLS_ROOT, relative_path)
-            py_protocols.append(
-                AnalyzedProtocol(
-                    host_protocol_file=path,
-                    container_protocol_file=container_path,
-                    host_analysis_file=host_analysis_path(path, tag),
-                    container_analysis_file=container_analysis_path(path, tag),
-                    tag=tag,
-                    custom_labware_paths=all_custom_labware_paths,
-                )
-            )
-        return py_protocols
-
-    return find_pd_protocols() + find_python_protocols()
-
-
-def remove_all_files_in_directory(directory: Path) -> None:
-    for filename in os.listdir(directory):
-        file_path = os.path.join(directory, filename)
-        try:
-            if os.path.isfile(file_path) or os.path.islink(file_path):
-                os.unlink(file_path)
-            elif os.path.isdir(file_path):
-                pass  # Currently, subdirectories are not removed
-        except Exception as e:
-            console.print(f"Failed to delete {file_path}. Reason: {e}")
-
-
 def protocol_custom_labware_paths_in_container(protocol: Protocol) -> List[str]:
     if not HOST_LABWARE.is_dir() or protocol.custom_labware is None:
         return []
@@ -269,98 +174,81 @@ def protocol_custom_labware_paths_in_container(protocol: Protocol) -> List[str]:
     ]
 
 
-def analyze(protocol: AnalyzedProtocol, container: docker.models.containers.Container) -> bool:
-    # Run the analyze command
-    command = f"python -I -m opentrons.cli analyze --json-output {protocol.container_analysis_file} {protocol.container_protocol_file} {' '.join(protocol.custom_labware_paths)}"  # noqa: E501
+def analyze(protocol: TargetProtocol, container: docker.models.containers.Container) -> bool:
+    command = (
+        f"python -I -m opentrons.cli analyze --json-output {protocol.container_analysis_file} "
+        f"{protocol.container_protocol_file} {' '.join(protocol.custom_labware_paths)}"
+    )
     start_time = time.time()
-    timeout_duration = 30  # seconds
+    result = None
+    exit_code = None
     try:
-        with timeout(timeout_duration):
-            command_result = container.exec_run(cmd=command)
-            exit_code = command_result.exit_code
-            result = command_result.output
-            protocol.command_output = result.decode("utf-8")
-            protocol.command_exit_code = exit_code
-            protocol.set_analysis()
-            protocol.set_analysis_execution_time(time.time() - start_time)
-            return True
-    except TimeoutError:
-        console.print(f"Command execution exceeded {timeout_duration} seconds and was aborted.")
-        logs = container.logs()
-        # Decode and print the logs
-        console.print(f"container logs{logs.decode('utf-8')}")
-    except KeyboardInterrupt:
-        console.print("Execution was interrupted by the user.")
-        raise
+        command_result = container.exec_run(cmd=command)
+        exit_code = command_result.exit_code
+        result = command_result.output
+        protocol.command_output = result.decode("utf-8") if result else ""
+        protocol.command_exit_code = exit_code
+        protocol.set_analysis()
+        return True
     except Exception as e:
         console.print(f"An unexpected error occurred: {e}")
-        protocol.command_output = result.decode("utf-8")
-        console.print(f"Command output: {protocol.command_output}")
-        protocol.command_exit_code = exit_code
-        console.print(f"Exit code: {protocol.command_exit_code}")
+        protocol.command_output = result.decode("utf-8") if result else str(e)
+        protocol.command_exit_code = exit_code if exit_code is not None else -1
         protocol.set_analysis()
         return False
-    protocol.command_output = None
-    protocol.command_exit_code = None
-    protocol.analysis = None
-    protocol.set_analysis_execution_time(time.time() - start_time)
-    return False
-
+    finally:
+        protocol.set_analysis_execution_time(time.time() - start_time)
+        console.print(f"Analysis of {protocol.host_protocol_file.name} completed in {protocol.analysis_execution_time:.2f} seconds.")
+
+
+def analyze_many(protocol_files: List[TargetProtocol], containers: List[docker.models.containers.Container]) -> None:
+    num_containers = len(containers)
+    with ThreadPoolExecutor(max_workers=num_containers) as executor:
+        futures = []
+        for i, protocol in enumerate(protocol_files):
+            container = containers[i % num_containers]
+            future = executor.submit(analyze, protocol, container)
+            futures.append((future, protocol))
+        for future, protocol in futures:
+            try:
+                future.result(timeout=ANALYSIS_TIMEOUT_SECONDS)
+            except concurrent.futures.TimeoutError:
+                console.print(f"Analysis of {protocol.host_protocol_file} exceeded {ANALYSIS_TIMEOUT_SECONDS} seconds and was aborted.")
+                # Handle timeout (e.g., mark as failed)
+            except Exception as e:
+                console.print(f"An error occurred during analysis: {e}")
 
-def analyze_many(protocol_files: List[AnalyzedProtocol], container: docker.models.containers.Container) -> None:
-    for file in protocol_files:
-        analyze(file, container)
     accumulated_time = sum(protocol.analysis_execution_time for protocol in protocol_files if protocol.analysis_execution_time is not None)
     console.print(f"{len(protocol_files)} protocols with total analysis time of {accumulated_time:.2f} seconds.\n")
 
 
-def analyze_against_image(tag: str) -> List[AnalyzedProtocol]:
+def analyze_against_image(tag: str, protocols: List[TargetProtocol], num_containers: int = 1) -> List[TargetProtocol]:
     image_name = f"{IMAGE}:{tag}"
-    protocols = generate_protocols(tag)
-    protocols_to_process = protocols
-    # protocols_to_process = protocols[:1]  # For testing
     try:
-        console.print(f"Analyzing {len(protocols_to_process)} protocol(s) against {image_name}...")
-        container = stop_and_restart_container(image_name)
-        analyze_many(protocols_to_process, container)
+        console.print(f"\nAnalyzing {len(protocols)} protocol(s) against {image_name} using {num_containers} container(s)...")
+        containers = start_containers(image_name, num_containers)
+        analyze_many(protocols, containers)
     finally:
         stop_and_remove_containers(image_name)
-    return protocols_to_process
+    return protocols
 
 
 def generate_analyses_from_test(tag: str, protocols: List[Protocol]) -> None:
     """Generate analyses from the tests."""
-    try:
-        image_name = f"{IMAGE}:{tag}"
-        protocols_to_process: List[AnalyzedProtocol] = []
-        # convert the protocols to AnalyzedProtocol
-        for test_protocol in protocols:
-            host_protocol_file = Path(test_protocol.file_path)
-            container_protocol_file = Path(CONTAINER_PROTOCOLS_ROOT, host_protocol_file.relative_to(HOST_PROTOCOLS_ROOT))
-            host_analysis_file = host_analysis_path(host_protocol_file, tag)
-            container_analysis_file = container_analysis_path(host_protocol_file, tag)
-            protocols_to_process.append(
-                AnalyzedProtocol(
-                    host_protocol_file,
-                    container_protocol_file,
-                    host_analysis_file,
-                    container_analysis_file,
-                    tag,
-                    protocol_custom_labware_paths_in_container(test_protocol),
-                )
+    protocols_to_process: List[TargetProtocol] = []
+    for test_protocol in protocols:
+        host_protocol_file = Path(test_protocol.file_path)
+        container_protocol_file = Path(CONTAINER_PROTOCOLS_ROOT, host_protocol_file.relative_to(HOST_PROTOCOLS_ROOT))
+        host_analysis_file = host_analysis_path(host_protocol_file, tag)
+        container_analysis_file = container_analysis_path(host_protocol_file, tag)
+        protocols_to_process.append(
+            TargetProtocol(
+                host_protocol_file,
+                container_protocol_file,
+                host_analysis_file,
+                container_analysis_file,
+                tag,
+                protocol_custom_labware_paths_in_container(test_protocol),
             )
-        console.print(f"Analyzing {len(protocols_to_process)} protocol(s) against {tag}...")
-        container = stop_and_restart_container(image_name)
-        # Analyze the protocols
-        for protocol_to_analyze in protocols_to_process:
-            console.print(f"Analyzing {protocol_to_analyze.host_protocol_file}...")
-            analyzed = analyze(protocol_to_analyze, container)
-            if not analyzed:  # Fail fast
-                console.print("Analysis failed. Exiting.")
-                stop_and_remove_containers(image_name)
-        accumulated_time = sum(
-            protocol.analysis_execution_time for protocol in protocols_to_process if protocol.analysis_execution_time is not None
         )
-        console.print(f"{len(protocols_to_process)} protocols with total analysis time of {accumulated_time:.2f} seconds.\n")
-    finally:
-        stop_and_remove_containers(image_name)
+    analyze_against_image(tag, protocols_to_process, ANALYSIS_CONTAINER_INSTANCES)

From 00de8fda53c795983cd5d33d211f44dc13f8c181 Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 10:04:10 -0500
Subject: [PATCH 5/8] remove unused files

---
 analyses-snapshot-testing/citools/write_failed_analysis.py | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 delete mode 100644 analyses-snapshot-testing/citools/write_failed_analysis.py

diff --git a/analyses-snapshot-testing/citools/write_failed_analysis.py b/analyses-snapshot-testing/citools/write_failed_analysis.py
deleted file mode 100644
index e69de29bb2d..00000000000

From 4ac0e4e6b7abc4a0549b4c5d67839fb7ddd49a89 Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 10:17:24 -0500
Subject: [PATCH 6/8] no cleanup and more containers

---
 .../citools/generate_analyses.py                      | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/analyses-snapshot-testing/citools/generate_analyses.py b/analyses-snapshot-testing/citools/generate_analyses.py
index a6ce27c399d..1b240f6fc00 100644
--- a/analyses-snapshot-testing/citools/generate_analyses.py
+++ b/analyses-snapshot-testing/citools/generate_analyses.py
@@ -24,11 +24,15 @@
 HOST_RESULTS: Path = Path(Path(__file__).parent.parent, "analysis_results")
 ANALYSIS_SUFFIX: str = "analysis.json"
 ANALYSIS_TIMEOUT_SECONDS: int = 30
-ANALYSIS_CONTAINER_INSTANCES: int = 6
+ANALYSIS_CONTAINER_INSTANCES: int = 10
 
 console = Console()
 
 
+def is_running_in_github_actions() -> bool:
+    return os.getenv("GITHUB_ACTIONS") == "true"
+
+
 class ProtocolType(Enum):
     PROTOCOL_DESIGNER = auto()
     PYTHON = auto()
@@ -229,7 +233,10 @@ def analyze_against_image(tag: str, protocols: List[TargetProtocol], num_contain
         containers = start_containers(image_name, num_containers)
         analyze_many(protocols, containers)
     finally:
-        stop_and_remove_containers(image_name)
+        if is_running_in_github_actions():
+            pass  # We don't need to stop and remove containers in CI
+        else:
+            stop_and_remove_containers(image_name)
     return protocols
 
 

From 49a4319ccc92298e4b17103753e5dafc19fba9d5 Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 10:26:41 -0500
Subject: [PATCH 7/8] sweet spot on containers and clocktime

---
 analyses-snapshot-testing/citools/generate_analyses.py | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/analyses-snapshot-testing/citools/generate_analyses.py b/analyses-snapshot-testing/citools/generate_analyses.py
index 1b240f6fc00..c79bd1d9dea 100644
--- a/analyses-snapshot-testing/citools/generate_analyses.py
+++ b/analyses-snapshot-testing/citools/generate_analyses.py
@@ -24,7 +24,7 @@
 HOST_RESULTS: Path = Path(Path(__file__).parent.parent, "analysis_results")
 ANALYSIS_SUFFIX: str = "analysis.json"
 ANALYSIS_TIMEOUT_SECONDS: int = 30
-ANALYSIS_CONTAINER_INSTANCES: int = 10
+ANALYSIS_CONTAINER_INSTANCES: int = 7
 
 console = Console()
 
@@ -242,6 +242,7 @@ def analyze_against_image(tag: str, protocols: List[TargetProtocol], num_contain
 
 def generate_analyses_from_test(tag: str, protocols: List[Protocol]) -> None:
     """Generate analyses from the tests."""
+    start_time = time.time()
     protocols_to_process: List[TargetProtocol] = []
     for test_protocol in protocols:
         host_protocol_file = Path(test_protocol.file_path)
@@ -259,3 +260,5 @@ def generate_analyses_from_test(tag: str, protocols: List[Protocol]) -> None:
             )
         )
     analyze_against_image(tag, protocols_to_process, ANALYSIS_CONTAINER_INSTANCES)
+    end_time = time.time()
+    console.print(f"Clock time to generate analyses: {end_time - start_time:.2f} seconds.")

From b400e43ebc0a96072792c3b70b2a40784679feec Mon Sep 17 00:00:00 2001
From: Josh McVey <yersh13@gmail.com>
Date: Tue, 8 Oct 2024 10:43:43 -0500
Subject: [PATCH 8/8] 5 containers

---
 analyses-snapshot-testing/citools/generate_analyses.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/analyses-snapshot-testing/citools/generate_analyses.py b/analyses-snapshot-testing/citools/generate_analyses.py
index c79bd1d9dea..f67d0394429 100644
--- a/analyses-snapshot-testing/citools/generate_analyses.py
+++ b/analyses-snapshot-testing/citools/generate_analyses.py
@@ -24,7 +24,7 @@
 HOST_RESULTS: Path = Path(Path(__file__).parent.parent, "analysis_results")
 ANALYSIS_SUFFIX: str = "analysis.json"
 ANALYSIS_TIMEOUT_SECONDS: int = 30
-ANALYSIS_CONTAINER_INSTANCES: int = 7
+ANALYSIS_CONTAINER_INSTANCES: int = 5
 
 console = Console()