diff --git a/analyses-snapshot-testing/automation/data/protocols.py b/analyses-snapshot-testing/automation/data/protocols.py index 580c9183d9db..34d5ba6761f6 100644 --- a/analyses-snapshot-testing/automation/data/protocols.py +++ b/analyses-snapshot-testing/automation/data/protocols.py @@ -641,6 +641,13 @@ class Protocols: robot="Flex", ) + Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest: Protocol = Protocol( + file_stem="Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest", + file_extension="py", + robot="Flex", + custom_labware=["hacky_1000ul_flex_tiprack"] + ) + OT2_X_v2_18_None_None_duplicateRTPVariableName: Protocol = Protocol( file_stem="OT2_X_v2_18_None_None_duplicateRTPVariableName", file_extension="py", diff --git a/analyses-snapshot-testing/files/protocols/Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest.py b/analyses-snapshot-testing/files/protocols/Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest.py index 181f5aa652a1..cde0dce43b09 100644 --- a/analyses-snapshot-testing/files/protocols/Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest.py +++ b/analyses-snapshot-testing/files/protocols/Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest.py @@ -1,4 +1,4 @@ -import typing +from typing import Literal, Union, ClassVar, Dict, List, Optional from dataclasses import dataclass from opentrons import protocol_api from opentrons.protocol_api import OFF_DECK, SINGLE, ROW, COLUMN, PARTIAL_COLUMN @@ -7,8 +7,8 @@ # Need to add transfer, consolidate, and distribute # Tip pickup around thermocycler -PipetteNames = typing.Literal["flex_8channel_50", "flex_8channel_1000", "flex_96channel_1000"] -TipRackNames = typing.Literal["opentrons_flex_96_tiprack_1000ul", "opentrons_flex_96_tiprack_200ul", "opentrons_flex_96_tiprack_50ul"] +PipetteNames = Literal["flex_8channel_50", "flex_8channel_1000", "flex_96channel_1000"] +TipRackNames = Literal["opentrons_flex_96_tiprack_1000ul", "opentrons_flex_96_tiprack_200ul", "opentrons_flex_96_tiprack_50ul"] NUM_ROWS_IN_TIPRACK = 8 NUM_COLUMNS_IN_TIPRACK = 12 @@ -21,12 +21,12 @@ class LiquidTransferSettings: source_labware_deck_slot: str destination_labware_deck_slot: str - transfer_volume: int = LIQUID_TRANSFER_AMOUNT + transfer_volume: float = LIQUID_TRANSFER_AMOUNT @dataclass class PipetteConfiguration: - num_to_row_lookup: typing.ClassVar[typing.Dict[int, str]] = { + num_to_row_lookup: ClassVar[Dict[int, str]] = { 1: "A", 2: "B", 3: "C", @@ -36,7 +36,7 @@ class PipetteConfiguration: 7: "G", 8: "H", } - number_per_pickup_to_slot_lookup: typing.ClassVar[typing.Dict[int, str]] = { + number_per_pickup_to_slot_lookup: ClassVar[Dict[int, str]] = { 2: "G1", 3: "F1", 4: "E1", @@ -45,13 +45,14 @@ class PipetteConfiguration: 7: "B1", } - pickup_mode: typing.Literal[SINGLE, ROW, COLUMN, PARTIAL_COLUMN] + pickup_mode: Union[Literal["SINGLE"], Literal["ROW"], Literal["COLUMN"], Literal["PARTIAL_COLUMN"]] starting_pipette_nozzle: str - ending_pipette_nozzle: typing.Optional[str] # for PARTIAL_COLUMN only + ending_pipette_nozzle: Optional[str] # for PARTIAL_COLUMN only def _calculate_number_per_pickup_for_partial_column(self) -> int: assert self.pickup_mode == PARTIAL_COLUMN - for num_pickups_key, self.ending_pipette_nozzle in self.number_per_pickup_to_slot_lookup.items(): + well_name = self.ending_pipette_nozzle + for num_pickups_key, well_name_key in self.number_per_pickup_to_slot_lookup.items(): if well_name == well_name_key: return num_pickups_key else: @@ -67,7 +68,7 @@ def _calculate_max_pickups_for_partial_column(self) -> int: return NUM_COLUMNS_IN_TIPRACK * self._calculate_number_pickups_per_column_for_partial_column() - def _calculate_drop_location_list_for_partial_column(self) -> typing.List[str]: + def _calculate_drop_location_list_for_partial_column(self) -> List[str]: assert self.pickup_mode == PARTIAL_COLUMN # we should have the same number of drops as number of pickups num_drops = self._calculate_number_pickups_per_column_for_partial_column() @@ -81,6 +82,8 @@ def _calculate_drop_location_list_for_partial_column(self) -> typing.List[str]: drop_row = PipetteConfiguration.num_to_row_lookup[(NUM_ROWS_IN_TIPRACK + 1) - (drop_number * num_per_pickup)] drop_location_list.append(f"{drop_row}{col_number}") + return drop_location_list + @property def max_number_of_pickups(self) -> int: match self.pickup_mode.value: @@ -447,7 +450,8 @@ def run(protocol_context: protocol_api.ProtocolContext): raise ValueError("50μL pipette requires 50μL tip rack") if "8_channel" in PIPETTE_NAME: - PICKUP_CASES = EIGHT_CH_TEST_CASES + raise NotImplementedError("8 channel test cases not yet defined") + # PICKUP_CASES = EIGHT_CH_TEST_CASES else: PICKUP_CASES = NINETY_SIX_CH_TEST_CASES @@ -455,11 +459,7 @@ def run(protocol_context: protocol_api.ProtocolContext): pipette.default_speed = PIPETTING_SPEED for test_case in PICKUP_CASES: - pickup_tip_rack = protocol_context.load_labware( - load_name=TIP_RACK_NAME, - label="Tip Rack - Full", - location=protocol_api.OFF_DECK - ) + pickup_tip_rack = protocol_context.load_labware(load_name=TIP_RACK_NAME, label="Tip Rack - Full", location=protocol_api.OFF_DECK) drop_tip_rack = protocol_context.load_labware( load_name=HACKY_FLEX_1000_UL_TIPRACK_LOAD_NAME, diff --git a/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[ad39d1ce8c][Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest].json b/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[ad39d1ce8c][Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest].json new file mode 100644 index 000000000000..65c130d6a67a --- /dev/null +++ b/analyses-snapshot-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[ad39d1ce8c][Flex_S_v2_20_P1000_96_PartialTipPickupSmokeTest].json @@ -0,0 +1,43844 @@ +{ + "commands": [ + { + "commandType": "home", + "completedAt": "TIMESTAMP", + "createdAt": "TIMESTAMP", + "id": "UUID", + "key": "50c7ae73a4e3f7129874f39dfb514803", + "notes": [], + "params": {}, + "result": {}, + "startedAt": "TIMESTAMP", + "status": "succeeded" + }, + { + "commandType": "loadPipette", + "completedAt": "TIMESTAMP", + "createdAt": "TIMESTAMP", + "id": "UUID", + "key": "0c3bb3b5f63458c1ff149d26e64d98b5", + "notes": [], + "params": { + "liquidPresenceDetection": false, + "mount": "left", + "pipetteName": "p1000_96", + "tipOverlapNotAfterVersion": "v3" + }, + "result": { + "pipetteId": "UUID" + }, + "startedAt": "TIMESTAMP", + "status": "succeeded" + }, + { + "commandType": "loadLabware", + "completedAt": "TIMESTAMP", + "createdAt": "TIMESTAMP", + "id": "UUID", + "key": "80976ce3dffe6efe69a8b26c3c4a1f4b", + "notes": [], + "params": { + "displayName": "Tip Rack - Full", + "loadName": "opentrons_flex_96_tiprack_1000ul", + "location": "offDeck", + "namespace": "opentrons", + "version": 1 + }, + "result": { + "definition": { + "allowedRoles": [], + "brand": { + "brand": "Opentrons", + "brandId": [] + }, + "cornerOffsetFromSlot": { + "x": 0, + "y": 0, + "z": 0 + }, + "dimensions": { + "xDimension": 127.75, + "yDimension": 85.75, + "zDimension": 99 + }, + "gripForce": 16.0, + "gripHeightFromLabwareBottom": 23.9, + "gripperOffsets": {}, + "groups": [ + { + "metadata": {}, + "wells": [ + "A1", + "A10", + "A11", + "A12", + "A2", + "A3", + "A4", + "A5", + "A6", + "A7", + "A8", + "A9", + "B1", + "B10", + "B11", + "B12", + "B2", + "B3", + "B4", + "B5", + "B6", + "B7", + "B8", + "B9", + "C1", + "C10", + "C11", + "C12", + "C2", + "C3", + "C4", + "C5", + "C6", + "C7", + "C8", + "C9", + "D1", + "D10", + "D11", + "D12", + "D2", + "D3", + "D4", + "D5", + "D6", + "D7", + "D8", + "D9", + "E1", + "E10", + "E11", + "E12", + "E2", + "E3", + "E4", + "E5", + "E6", + "E7", + "E8", + "E9", + "F1", + "F10", + "F11", + "F12", + "F2", + "F3", + "F4", + "F5", + "F6", + "F7", + "F8", + "F9", + "G1", + "G10", + "G11", + "G12", + "G2", + "G3", + "G4", + "G5", + "G6", + "G7", + "G8", + "G9", + "H1", + "H10", + "H11", + "H12", + "H2", + "H3", + "H4", + "H5", + 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