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LEMS_L5bPyrCellHayEtAl2011.xml
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LEMS_L5bPyrCellHayEtAl2011.xml
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<Lems xmlns="http://www.neuroml.org/lems/0.7.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/lems/0.7.2 https://raw.github.com/LEMS/LEMS/development/Schemas/LEMS/LEMS_v0.7.2.xsd">
<Target component="sim1" reportFile="simulator.props" timesFile="time.dat"/>
<!--Include standard NeuroML 2 ComponentType definitions-->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>
<!--Include the generated NeuroML 2 files-->
<!-- Channel/synapse files-->
<Include file="Ca_HVA.channel.nml"/>
<Include file="Ca_LVAst.channel.nml"/>
<Include file="CaDynamics_E2_NML2.nml"/>
<Include file="Ih.channel.nml"/>
<Include file="Im.channel.nml"/>
<Include file="K_Pst.channel.nml"/>
<Include file="K_Tst.channel.nml"/>
<Include file="Nap_Et2.channel.nml"/>
<Include file="NaTa_t.channel.nml"/>
<Include file="pas.channel.nml"/>
<Include file="SK_E2.channel.nml"/>
<Include file="SKv3_1.channel.nml"/>
<!-- Cell files-->
<Include file="Soma_AllCML.cell.nml"/>
<!-- Network file-->
<Include file="L5bPyrCellHayEtAl2011.net.nml"/>
<!--Note: this could be: Simulation id="sim1" ... , but Component type="Simulation" ...
is used to allow validation of this file according to the LEMS schema specified above...-->
<Component type="Simulation" id="sim1" length="600.0ms" step="0.01ms" target="network_L5bPyrCellHayEtAl2011">
<Display id="CG_TestMod_v" title="L5bPyrCellHayEtAl2011: TestNeuroML, CG_TestCML, VOLTAGE" xmin="-60.0" xmax="660.0" ymin="-104.0" ymax="64.0" timeScale="1ms">
<Line id="VOLTAGE" timeScale="1ms" quantity="CG_TestCML/0/Soma_AllCML/v" scale="1 mV" color="#000000"/>
</Display>
<Display id="GraphWin_4" title="L5bPyrCellHayEtAl2011: TestNeuroML, CG_TestCML, Ca_LVAst:m, Ca_LVAst:h" xmin="-60.0" xmax="660.0" ymin="-0.1" ymax="1.1" timeScale="1ms">
<Line id="Ca_LVAst_m" timeScale="1ms" quantity="CG_TestCML/0/Soma_AllCML/biophys/membraneProperties/Ca_LVAst_all/Ca_LVAst/m/q" scale="1" color="#000000"/>
<Line id="Ca_LVAst_h" timeScale="1ms" quantity="CG_TestCML/0/Soma_AllCML/biophys/membraneProperties/Ca_LVAst_all/Ca_LVAst/h/q" scale="1" color="#ff0000"/>
</Display>
<Display id="GraphWin_5" title="L5bPyrCellHayEtAl2011: TestNeuroML, CG_TestCML, CaDynamics_E2_NML2:CONC:ca" xmin="-60.0" xmax="660.0" ymin="-1e-8" ymax="1e-9" timeScale="1ms">
<Line id="CaDynamics_E2_NML2_CONC_ca" timeScale="1ms" quantity="CG_TestCML/0/Soma_AllCML/caConc" scale="1 mol_per_cm3" color="#000000"/>
</Display>
<Display id="GraphWin_0" title="L5bPyrCellHayEtAl2011: TestNeuroML, CG_TestCML, Im:m" xmin="-60.0" xmax="660.0" ymin="-0.1" ymax="1.1" timeScale="1ms">
<Line id="Im_m" timeScale="1ms" quantity="CG_TestCML/0/Soma_AllCML/biophys/membraneProperties/Im_all/Im/m/q" scale="1" color="#000000"/>
</Display>
<OutputFile id="CG_TestCML_v_OF" fileName="CG_TestCML_0.dat">
<OutputColumn id="v" quantity="CG_TestCML/0/Soma_AllCML/v"/>
</OutputFile>
<OutputFile id="Var_20_OF" fileName="CG_TestCML_0.Ca_LVAst_m.dat">
<OutputColumn id="q" quantity="CG_TestCML/0/Soma_AllCML/biophys/membraneProperties/Ca_LVAst_all/Ca_LVAst/m/q"/>
</OutputFile>
<OutputFile id="Var_21_OF" fileName="CG_TestCML_0.Ca_LVAst_h.dat">
<OutputColumn id="q" quantity="CG_TestCML/0/Soma_AllCML/biophys/membraneProperties/Ca_LVAst_all/Ca_LVAst/h/q"/>
</OutputFile>
<OutputFile id="Var_35_OF" fileName="CG_TestCML_0.CaDynamics_E2_NML2_CONC_ca.dat">
<OutputColumn id="caConc" quantity="CG_TestCML/0/Soma_AllCML/caConc"/>
</OutputFile>
<OutputFile id="Var_5_OF" fileName="CG_TestCML_0.Im_m.dat">
<OutputColumn id="q" quantity="CG_TestCML/0/Soma_AllCML/biophys/membraneProperties/Im_all/Im/m/q"/>
</OutputFile>
</Component>
</Lems>