codeql.yml

# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "CodeQL"

# Disable automatic running for now since this workflow does not currently complete/takes forever to do things
# that similar workflows do quickly, for unknown reasons.
on: workflow_dispatch
  #push:
  #  branches: [ "master", "develop" ]
  #pull_request:
  #  # The branches below must be a subset of the branches above
  #  branches: [ "master", "develop" ]
  #schedule:
  #  - cron: '23 5 * * 5'

env:
  # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
  BUILD_TYPE: Release
  CC: gcc
  CXX: g++

jobs:
  analyze:
    name: CodeQL Analysis
    runs-on: ubuntu-latest
    permissions:
      actions: read
      contents: read
      security-events: write

    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9"]
        os: [ubuntu-22.04]
        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
        # Use only 'java' to analyze code written in Java, Kotlin or both
        # Use only 'javascript' to analyze code written in JavaScript, TypeScript or both
        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support

    steps:
    - name: Checkout repository
      uses: actions/checkout@v4

    # Initializes the CodeQL tools for scanning.
    - name: Initialize CodeQL
      uses: github/codeql-action/init@v2
      with:
        languages: cpp, python
        # If you wish to specify custom queries, you can do so here or in a config file.
        # By default, queries listed here will override any specified in a config file.
        # Prefix the list here with "+" to use these queries and those in the config file.

        # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
        # queries: security-extended,security-and-quality

    # Autobuild attempts to build any compiled languages  (C/C++, C#, Go, or Java).
    # If this step fails, then you should remove it and run the build manually (see below)
    # - name: Autobuild
    #  uses: github/codeql-action/autobuild@v2

    # ℹ️ Command-line programs to run using the OS shell.
    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun

    #   If the Autobuild fails above, remove it and uncomment the following three lines.
    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.

    # - run: |
    #   echo "Run, Build Application using script"
    #   ./location_of_script_within_repo/buildscript.sh
    
    - name: Install dependencies
      run: |
        bash ./scripts/install-dependencies-notest.sh ${{github.workspace}} ${{matrix.python-version}}

    - name: Configure CMake
      # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
      # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
      run: |
        source "${{github.workspace}}/miniconda/etc/profile.d/conda.sh"
        hash -r
        conda activate test-environment
        cmake -G Ninja -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -B build -S . -DCMAKE_INSTALL_PREFIX=${{github.workspace}}/miniconda/envs/test-environment -DBAG_BUILD_PYTHON:BOOL=ON

    - name: Build
      # Build your program with the given configuration
      run: |
        source "${{github.workspace}}/miniconda/etc/profile.d/conda.sh"
        hash -r
        conda activate test-environment
        export CC=${{env.CC}}
        export CXX=${{env.CXX}}
        cmake --build build
    
    - name: Install
      # Install into conda environment
      run: |
        source "${{github.workspace}}/miniconda/etc/profile.d/conda.sh"
        hash -r
        conda activate test-environment
        cmake --install build
        python ./build/api/swig/python/setup.py install

    - name: Perform CodeQL Analysis C++
      uses: github/codeql-action/analyze@v2
      with:
        category: "/language:cpp"
    
    - name: Perform CodeQL Analysis Python
      uses: github/codeql-action/analyze@v2
      with:
        category: "/language:python"