diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 00000000..2e17b3fc
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,13 @@
+version: 2
+updates:
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+    allow:
+      - dependency-type: "all"
+    versioning-strategy: "lockfile-only"
+    groups:
+      dependencies:
+        patterns:
+          - "*"
\ No newline at end of file
diff --git a/poetry.lock b/poetry.lock
index 6561d021..b10609a1 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
 version = "0.7.13"
 description = "A configurable sidebar-enabled Sphinx theme"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -16,7 +15,6 @@ files = [
 name = "anyio"
 version = "4.0.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -38,7 +36,6 @@ trio = ["trio (>=0.22)"]
 name = "appnope"
 version = "0.1.3"
 description = "Disable App Nap on macOS >= 10.9"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -50,7 +47,6 @@ files = [
 name = "argon2-cffi"
 version = "23.1.0"
 description = "Argon2 for Python"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -71,7 +67,6 @@ typing = ["mypy"]
 name = "argon2-cffi-bindings"
 version = "21.2.0"
 description = "Low-level CFFI bindings for Argon2"
-category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
@@ -109,7 +104,6 @@ tests = ["pytest"]
 name = "arrow"
 version = "1.3.0"
 description = "Better dates & times for Python"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -123,13 +117,12 @@ types-python-dateutil = ">=2.8.10"
 
 [package.extras]
 doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
-test = ["dateparser (>=1.0.0,<2.0.0)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (>=3.0.0,<4.0.0)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
 
 [[package]]
 name = "asciitree"
 version = "0.3.3"
 description = "Draws ASCII trees."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -140,7 +133,6 @@ files = [
 name = "ase"
 version = "3.22.1"
 description = "Atomic Simulation Environment"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -161,7 +153,6 @@ test = ["pytest (>=5.0.0)", "pytest-mock (>=3.3.0)", "pytest-xdist (>=1.30.0)"]
 name = "asteval"
 version = "0.9.31"
 description = "Safe, minimalistic evaluator of python expression using ast module"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -179,7 +170,6 @@ test = ["coverage", "pytest", "pytest-cov"]
 name = "astropy"
 version = "5.2.2"
 description = "Astronomy and astrophysics core library"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -233,7 +223,6 @@ test-all = ["coverage[toml]", "ipython (>=4.2)", "objgraph", "pytest (>=7.0)", "
 name = "asttokens"
 version = "2.4.0"
 description = "Annotate AST trees with source code positions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -251,7 +240,6 @@ test = ["astroid", "pytest"]
 name = "async-lru"
 version = "2.0.4"
 description = "Simple LRU cache for asyncio"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -266,7 +254,6 @@ typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
 name = "attrs"
 version = "23.1.0"
 description = "Classes Without Boilerplate"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -285,7 +272,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 name = "babel"
 version = "2.13.0"
 description = "Internationalization utilities"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -303,7 +289,6 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 name = "backcall"
 version = "0.2.0"
 description = "Specifications for callback functions passed in to an API"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -315,7 +300,6 @@ files = [
 name = "backports-zoneinfo"
 version = "0.2.1"
 description = "Backport of the standard library zoneinfo module"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -344,7 +328,6 @@ tzdata = ["tzdata"]
 name = "beautifulsoup4"
 version = "4.12.2"
 description = "Screen-scraping library"
-category = "main"
 optional = true
 python-versions = ">=3.6.0"
 files = [
@@ -363,7 +346,6 @@ lxml = ["lxml"]
 name = "bleach"
 version = "6.0.0"
 description = "An easy safelist-based HTML-sanitizing tool."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -382,7 +364,6 @@ css = ["tinycss2 (>=1.1.0,<1.2)"]
 name = "bokeh"
 version = "2.4.3"
 description = "Interactive plots and applications in the browser from Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -403,7 +384,6 @@ typing-extensions = ">=3.10.0"
 name = "cattrs"
 version = "23.1.2"
 description = "Composable complex class support for attrs and dataclasses."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -429,7 +409,6 @@ ujson = ["ujson (>=5.4.0,<6.0.0)"]
 name = "certifi"
 version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -441,7 +420,6 @@ files = [
 name = "cffi"
 version = "1.16.0"
 description = "Foreign Function Interface for Python calling C code."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -506,7 +484,6 @@ pycparser = "*"
 name = "charset-normalizer"
 version = "3.3.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -606,7 +583,6 @@ files = [
 name = "click"
 version = "8.1.7"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -621,7 +597,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "cloudpickle"
 version = "2.2.1"
 description = "Extended pickling support for Python objects"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -633,7 +608,6 @@ files = [
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -645,7 +619,6 @@ files = [
 name = "comm"
 version = "0.1.4"
 description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -665,7 +638,6 @@ typing = ["mypy (>=0.990)"]
 name = "commonmark"
 version = "0.9.1"
 description = "Python parser for the CommonMark Markdown spec"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -680,7 +652,6 @@ test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
 name = "contourpy"
 version = "1.1.1"
 description = "Python library for calculating contours of 2D quadrilateral grids"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -752,7 +723,6 @@ test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
 name = "coverage"
 version = "7.3.2"
 description = "Code coverage measurement for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -820,7 +790,6 @@ toml = ["tomli"]
 name = "cramjam"
 version = "2.7.0"
 description = "Thin Python bindings to de/compression algorithms in Rust"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -844,6 +813,16 @@ files = [
     {file = "cramjam-2.7.0-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:0b48b11c328d91250dadc63c00753f5ba26eb9df5fe75ba2ce8a78631260479d"},
     {file = "cramjam-2.7.0-cp311-none-win32.whl", hash = "sha256:bef07e7d4607c4d70627e58eb630fe60e48b80a61ab05b33314e3296eb90af78"},
     {file = "cramjam-2.7.0-cp311-none-win_amd64.whl", hash = "sha256:3f2e41dc8143d0e88ec9ba3ff66c8d2aea486b04931119abe9e394f9961d74bc"},
+    {file = "cramjam-2.7.0-cp312-cp312-macosx_10_7_x86_64.whl", hash = "sha256:8e82276b120000834af3f776cbe22ac3016cd9e0ed00e7f3fb31e2ce95e17181"},
+    {file = "cramjam-2.7.0-cp312-cp312-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:2b5a463b01d8867f78a361defb4fadca63635965e8204f7e2409b717d85f0c1d"},
+    {file = "cramjam-2.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b84565611f36ee8c3944b96bb01ee4d44c101acf84f1430c9414986ab3a7fb03"},
+    {file = "cramjam-2.7.0-cp312-cp312-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:3cd45d09229960a89e0e3bbf71d29ac399391446f51279f3202846d7da106eb7"},
+    {file = "cramjam-2.7.0-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:4bb065d054e49645414bc84eaa49a6b7ed6c7185fb8ba2648c518344cf481144"},
+    {file = "cramjam-2.7.0-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:9a3f45cd17730c00358643a814d5921a31c8a0d238582e08594fa86fdbc8401c"},
+    {file = "cramjam-2.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6bf4ec082a7647ed7463c5e0bd176850a9f013c258ad98f53055bcd1716c7fac"},
+    {file = "cramjam-2.7.0-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:9f9e403be6307e98a47cc7d0132fe1fe4683c873c5d7d9da099fbac9c299a4b0"},
+    {file = "cramjam-2.7.0-cp312-none-win32.whl", hash = "sha256:fd2e81c69baacb95fa28cdf844f714d7c03f0c805f4fa2decc5e9565e6b4405d"},
+    {file = "cramjam-2.7.0-cp312-none-win_amd64.whl", hash = "sha256:831951a3eccebd5911387e3fff14483747d3dae5ad496afbd50447ffe2d03dba"},
     {file = "cramjam-2.7.0-cp37-cp37m-macosx_10_7_x86_64.whl", hash = "sha256:d143ccb3f5aae640f0c2dd6244d43f5e5e81d847b50c2eb9f08dcc3dc33f367a"},
     {file = "cramjam-2.7.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:47ae97247a58d3095be800420bba7e43cc6958e67f9dfddd12decdb4c99c4d6f"},
     {file = "cramjam-2.7.0-cp37-cp37m-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:6a8f0fd14bd11f2a625e5c554fd93c7775082c31ffd9fbabb4fe9db3031645d0"},
@@ -892,7 +871,6 @@ dev = ["black (==22.3.0)", "hypothesis", "numpy", "pytest (>=5.30)", "pytest-xdi
 name = "cycler"
 version = "0.12.0"
 description = "Composable style cycles"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -908,7 +886,6 @@ tests = ["pytest", "pytest-cov", "pytest-xdist"]
 name = "dask"
 version = "2022.12.1"
 description = "Parallel PyData with Task Scheduling"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -938,7 +915,6 @@ test = ["pandas[test]", "pre-commit", "pytest", "pytest-rerunfailures", "pytest-
 name = "debugpy"
 version = "1.8.0"
 description = "An implementation of the Debug Adapter Protocol for Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -966,7 +942,6 @@ files = [
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -978,7 +953,6 @@ files = [
 name = "defusedxml"
 version = "0.7.1"
 description = "XML bomb protection for Python stdlib modules"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -990,7 +964,6 @@ files = [
 name = "diffpy-structure"
 version = "3.1.0"
 description = "Crystal structure container and parsers for structure formats."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1005,7 +978,6 @@ six = "*"
 name = "diffsims"
 version = "0.5.2"
 description = "Diffraction Simulations in Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1033,7 +1005,6 @@ tests = ["coverage (>=5.0)", "pytest (>=5.4)", "pytest-cov (>=2.8.1)", "pytest-x
 name = "dill"
 version = "0.3.7"
 description = "serialize all of Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1048,7 +1019,6 @@ graph = ["objgraph (>=1.7.2)"]
 name = "docutils"
 version = "0.18.1"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1060,7 +1030,6 @@ files = [
 name = "entrypoints"
 version = "0.4"
 description = "Discover and load entry points from installed packages."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1072,7 +1041,6 @@ files = [
 name = "exceptiongroup"
 version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1087,7 +1055,6 @@ test = ["pytest (>=6)"]
 name = "execnet"
 version = "2.0.2"
 description = "execnet: rapid multi-Python deployment"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1102,7 +1069,6 @@ testing = ["hatch", "pre-commit", "pytest", "tox"]
 name = "executing"
 version = "2.0.0"
 description = "Get the currently executing AST node of a frame, and other information"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1117,7 +1083,6 @@ tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipyth
 name = "fabio"
 version = "2023.6.0"
 description = "FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1158,7 +1123,6 @@ numpy = "*"
 name = "fastdtw"
 version = "0.3.4"
 description = "Dynamic Time Warping (DTW) algorithm with an O(N) time and memory complexity."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1173,7 +1137,6 @@ numpy = "*"
 name = "fasteners"
 version = "0.19"
 description = "A python package that provides useful locks"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1185,7 +1148,6 @@ files = [
 name = "fastjsonschema"
 version = "2.18.1"
 description = "Fastest Python implementation of JSON schema"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -1200,7 +1162,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 name = "fastparquet"
 version = "0.8.3"
 description = "Python support for Parquet file format"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1246,7 +1207,6 @@ lzo = ["python-lzo"]
 name = "flatdict"
 version = "4.0.1"
 description = "Python module for interacting with nested dicts as a single level dict with delimited keys."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1257,7 +1217,6 @@ files = [
 name = "fonttools"
 version = "4.43.0"
 description = "Tools to manipulate font files"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1323,7 +1282,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 name = "fqdn"
 version = "1.5.1"
 description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 files = [
@@ -1335,7 +1293,6 @@ files = [
 name = "fsspec"
 version = "2023.9.2"
 description = "File-system specification"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1371,7 +1328,6 @@ tqdm = ["tqdm"]
 name = "furo"
 version = "2023.9.10"
 description = "A clean customisable Sphinx documentation theme."
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -1389,7 +1345,6 @@ sphinx-basic-ng = "*"
 name = "future"
 version = "0.18.3"
 description = "Clean single-source support for Python 3 and 2"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1400,7 +1355,6 @@ files = [
 name = "gitdb"
 version = "4.0.10"
 description = "Git Object Database"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1415,7 +1369,6 @@ smmap = ">=3.0.1,<6"
 name = "gitpython"
 version = "3.1.37"
 description = "GitPython is a Python library used to interact with Git repositories"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1433,7 +1386,6 @@ test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit"
 name = "h5py"
 version = "3.9.0"
 description = "Read and write HDF5 files from Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1467,7 +1419,6 @@ numpy = ">=1.17.3"
 name = "hyperspy"
 version = "1.7.5"
 description = "Multidimensional data analysis toolbox"
-category = "main"
 optional = false
 python-versions = "~=3.6"
 files = [
@@ -1538,7 +1489,6 @@ usid = ["pyUSID (>=0.0.7)", "sidpy"]
 name = "idna"
 version = "3.4"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1550,7 +1500,6 @@ files = [
 name = "ifes-apt-tc-data-modeling"
 version = "0.0.9"
 description = "Foster exchange about data models and work towards clear specifications of file formats and data models in the research field of atom probe microscopy."
-category = "main"
 optional = false
 python-versions = "<3.11,>=3.8"
 files = [
@@ -1572,7 +1521,6 @@ dev = ["jupyterlab (>=3.5.2,<3.6.0)", "jupyterlab-h5web (>=6.6.1)", "twine (>=4.
 name = "imageio"
 version = "2.27.0"
 description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1604,7 +1552,6 @@ tifffile = ["tifffile"]
 name = "imagesize"
 version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1616,7 +1563,6 @@ files = [
 name = "importlib-metadata"
 version = "6.8.0"
 description = "Read metadata from Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1636,7 +1582,6 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs
 name = "importlib-resources"
 version = "6.1.0"
 description = "Read resources from Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1655,7 +1600,6 @@ testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)",
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1667,7 +1611,6 @@ files = [
 name = "ipykernel"
 version = "6.25.2"
 description = "IPython Kernel for Jupyter"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1681,7 +1624,7 @@ comm = ">=0.1.1"
 debugpy = ">=1.6.5"
 ipython = ">=7.23.1"
 jupyter-client = ">=6.1.12"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 matplotlib-inline = ">=0.1"
 nest-asyncio = "*"
 packaging = "*"
@@ -1701,7 +1644,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio"
 name = "ipympl"
 version = "0.9.3"
 description = "Matplotlib Jupyter Extension"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1725,7 +1667,6 @@ docs = ["Sphinx (>=1.5)", "myst-nb", "sphinx-book-theme", "sphinx-copybutton", "
 name = "ipyparallel"
 version = "8.6.1"
 description = "Interactive Parallel Computing with IPython"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1758,7 +1699,6 @@ test = ["ipython[test]", "pytest", "pytest-asyncio", "pytest-cov", "testpath"]
 name = "ipython"
 version = "8.12.3"
 description = "IPython: Productive Interactive Computing"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1798,7 +1738,6 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pa
 name = "ipython-genutils"
 version = "0.2.0"
 description = "Vestigial utilities from IPython"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1810,7 +1749,6 @@ files = [
 name = "ipywidgets"
 version = "8.1.1"
 description = "Jupyter interactive widgets"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1832,7 +1770,6 @@ test = ["ipykernel", "jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"]
 name = "isoduration"
 version = "20.11.0"
 description = "Operations with ISO 8601 durations"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -1847,7 +1784,6 @@ arrow = ">=0.15.0"
 name = "jedi"
 version = "0.19.1"
 description = "An autocompletion tool for Python that can be used for text editors."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1867,7 +1803,6 @@ testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1885,7 +1820,6 @@ i18n = ["Babel (>=2.7)"]
 name = "joblib"
 version = "1.3.2"
 description = "Lightweight pipelining with Python functions"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1897,7 +1831,6 @@ files = [
 name = "json5"
 version = "0.9.14"
 description = "A Python implementation of the JSON5 data format."
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -1912,7 +1845,6 @@ dev = ["hypothesis"]
 name = "jsonpointer"
 version = "2.4"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
 files = [
@@ -1924,7 +1856,6 @@ files = [
 name = "jsonschema"
 version = "4.19.1"
 description = "An implementation of JSON Schema validation for Python"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -1956,7 +1887,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 name = "jsonschema-specifications"
 version = "2023.7.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -1972,7 +1902,6 @@ referencing = ">=0.28.0"
 name = "jupyter"
 version = "1.0.0"
 description = "Jupyter metapackage. Install all the Jupyter components in one go."
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -1993,7 +1922,6 @@ qtconsole = "*"
 name = "jupyter-client"
 version = "8.3.1"
 description = "Jupyter protocol implementation and client libraries"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2003,7 +1931,7 @@ files = [
 
 [package.dependencies]
 importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""}
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 python-dateutil = ">=2.8.2"
 pyzmq = ">=23.0"
 tornado = ">=6.2"
@@ -2017,7 +1945,6 @@ test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pyt
 name = "jupyter-console"
 version = "6.6.3"
 description = "Jupyter terminal console"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -2029,7 +1956,7 @@ files = [
 ipykernel = ">=6.14"
 ipython = "*"
 jupyter-client = ">=7.0.0"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 prompt-toolkit = ">=3.0.30"
 pygments = "*"
 pyzmq = ">=17"
@@ -2042,7 +1969,6 @@ test = ["flaky", "pexpect", "pytest"]
 name = "jupyter-core"
 version = "5.3.2"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2063,7 +1989,6 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
 name = "jupyter-events"
 version = "0.7.0"
 description = "Jupyter Event System library"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2089,7 +2014,6 @@ test = ["click", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.19.0)", "p
 name = "jupyter-lsp"
 version = "2.2.0"
 description = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2105,7 +2029,6 @@ jupyter-server = ">=1.1.2"
 name = "jupyter-server"
 version = "2.7.3"
 description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2118,7 +2041,7 @@ anyio = ">=3.1.0"
 argon2-cffi = "*"
 jinja2 = "*"
 jupyter-client = ">=7.4.4"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 jupyter-events = ">=0.6.0"
 jupyter-server-terminals = "*"
 nbconvert = ">=6.4.4"
@@ -2142,7 +2065,6 @@ test = ["flaky", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-sc
 name = "jupyter-server-terminals"
 version = "0.4.4"
 description = "A Jupyter Server Extension Providing Terminals."
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2162,7 +2084,6 @@ test = ["coverage", "jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-cov",
 name = "jupyterlab"
 version = "4.0.6"
 description = "JupyterLab computational environment"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2196,7 +2117,6 @@ test = ["coverage", "pytest (>=7.0)", "pytest-check-links (>=0.7)", "pytest-cons
 name = "jupyterlab-pygments"
 version = "0.2.2"
 description = "Pygments theme using JupyterLab CSS variables"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -2208,7 +2128,6 @@ files = [
 name = "jupyterlab-server"
 version = "2.25.0"
 description = "A set of server components for JupyterLab and JupyterLab like applications."
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2235,7 +2154,6 @@ test = ["hatch", "ipykernel", "openapi-core (>=0.18.0,<0.19.0)", "openapi-spec-v
 name = "jupyterlab-widgets"
 version = "3.0.9"
 description = "Jupyter interactive widgets for JupyterLab"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2247,7 +2165,6 @@ files = [
 name = "kikuchipy"
 version = "0.8.7"
 description = "Processing, simulating and indexing of electron backscatter diffraction (EBSD) patterns."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2284,7 +2201,6 @@ viz = ["matplotlib (>=3.5)", "pyvista"]
 name = "kiwisolver"
 version = "1.4.5"
 description = "A fast implementation of the Cassowary constraint solver"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2398,7 +2314,6 @@ files = [
 name = "lark"
 version = "1.1.7"
 description = "a modern parsing library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2416,7 +2331,6 @@ regex = ["regex"]
 name = "lazy-loader"
 version = "0.3"
 description = "lazy_loader"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2432,7 +2346,6 @@ test = ["pytest (>=7.4)", "pytest-cov (>=4.1)"]
 name = "llvmlite"
 version = "0.38.1"
 description = "lightweight wrapper around basic LLVM functionality"
-category = "main"
 optional = false
 python-versions = ">=3.7,<3.11"
 files = [
@@ -2470,7 +2383,6 @@ files = [
 name = "lmfit"
 version = "1.2.2"
 description = "Least-Squares Minimization with Bounds and Constraints"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2494,7 +2406,6 @@ test = ["coverage", "flaky", "pytest", "pytest-cov"]
 name = "locket"
 version = "1.0.0"
 description = "File-based locks for Python on Linux and Windows"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2506,7 +2417,6 @@ files = [
 name = "markdown-it-py"
 version = "3.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2531,7 +2441,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 name = "markupsafe"
 version = "2.1.3"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2601,7 +2510,6 @@ files = [
 name = "matplotlib"
 version = "3.7.3"
 description = "Python plotting package"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2671,7 +2579,6 @@ setuptools_scm = ">=7"
 name = "matplotlib-inline"
 version = "0.1.6"
 description = "Inline Matplotlib backend for Jupyter"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -2686,7 +2593,6 @@ traitlets = "*"
 name = "matplotlib-scalebar"
 version = "0.8.1"
 description = "Artist for matplotlib to display a scale bar"
-category = "main"
 optional = false
 python-versions = "~=3.7"
 files = [
@@ -2701,7 +2607,6 @@ matplotlib = "*"
 name = "mdurl"
 version = "0.1.2"
 description = "Markdown URL utilities"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2713,7 +2618,6 @@ files = [
 name = "mistune"
 version = "3.0.2"
 description = "A sane and fast Markdown parser with useful plugins and renderers"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -2725,7 +2629,6 @@ files = [
 name = "mpmath"
 version = "1.3.0"
 description = "Python library for arbitrary-precision floating-point arithmetic"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2743,7 +2646,6 @@ tests = ["pytest (>=4.6)"]
 name = "natsort"
 version = "8.4.0"
 description = "Simple yet flexible natural sorting in Python."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2759,7 +2661,6 @@ icu = ["PyICU (>=1.0.0)"]
 name = "nbclient"
 version = "0.8.0"
 description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
-category = "main"
 optional = true
 python-versions = ">=3.8.0"
 files = [
@@ -2769,7 +2670,7 @@ files = [
 
 [package.dependencies]
 jupyter-client = ">=6.1.12"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 nbformat = ">=5.1"
 traitlets = ">=5.4"
 
@@ -2782,7 +2683,6 @@ test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=
 name = "nbconvert"
 version = "7.9.2"
 description = "Converting Jupyter Notebooks"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2821,7 +2721,6 @@ webpdf = ["playwright"]
 name = "nbformat"
 version = "5.9.2"
 description = "The Jupyter Notebook format"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2843,7 +2742,6 @@ test = ["pep440", "pre-commit", "pytest", "testpath"]
 name = "nest-asyncio"
 version = "1.5.8"
 description = "Patch asyncio to allow nested event loops"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -2855,7 +2753,6 @@ files = [
 name = "networkx"
 version = "3.1"
 description = "Python package for creating and manipulating graphs and networks"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2874,7 +2771,6 @@ test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 name = "niondata"
 version = "0.15.3"
 description = "A data processing library for Nion Swift."
-category = "main"
 optional = false
 python-versions = "~=3.8"
 files = [
@@ -2891,7 +2787,6 @@ scipy = "*"
 name = "nionswift"
 version = "0.16.8"
 description = "Nion Swift: Scientific Image Processing."
-category = "main"
 optional = false
 python-versions = "<3.12,>=3.8"
 files = [
@@ -2916,7 +2811,6 @@ tzlocal = "*"
 name = "nionswift-io"
 version = "0.15.1"
 description = "NionSwift IO handlers."
-category = "main"
 optional = false
 python-versions = "~=3.8"
 files = [
@@ -2934,7 +2828,6 @@ numpy = ">=1.21,<2.0"
 name = "nionui"
 version = "0.6.10"
 description = "Nion UI framework."
-category = "main"
 optional = false
 python-versions = "~=3.8"
 files = [
@@ -2951,7 +2844,6 @@ numpy = ">=1.21,<2.0"
 name = "nionutils"
 version = "0.4.6"
 description = "Nion utility classes."
-category = "main"
 optional = false
 python-versions = "~=3.8"
 files = [
@@ -2963,7 +2855,6 @@ files = [
 name = "notebook"
 version = "7.0.4"
 description = "Jupyter Notebook - A web-based notebook environment for interactive computing"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -2987,7 +2878,6 @@ test = ["importlib-resources (>=5.0)", "ipykernel", "jupyter-server[test] (>=2.4
 name = "notebook-shim"
 version = "0.2.3"
 description = "A shim layer for notebook traits and config"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -3005,7 +2895,6 @@ test = ["pytest", "pytest-console-scripts", "pytest-jupyter", "pytest-tornasync"
 name = "numba"
 version = "0.55.2"
 description = "compiling Python code using LLVM"
-category = "main"
 optional = false
 python-versions = ">=3.7,<3.11"
 files = [
@@ -3048,7 +2937,6 @@ setuptools = "*"
 name = "numcodecs"
 version = "0.11.0"
 description = "A Python package providing buffer compression and transformation codecs for use"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3081,7 +2969,6 @@ zfpy = ["zfpy (>=1.0.0)"]
 name = "numexpr"
 version = "2.8.6"
 description = "Fast numerical expression evaluator for NumPy"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3122,50 +3009,39 @@ numpy = ">=1.13.3"
 
 [[package]]
 name = "numpy"
-version = "1.21.6"
+version = "1.22.0"
 description = "NumPy is the fundamental package for array computing with Python."
-category = "main"
 optional = false
-python-versions = ">=3.7,<3.11"
+python-versions = ">=3.8"
 files = [
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 [[package]]
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 version = "2022.4.3"
 description = "Add a quaternion dtype to NumPy"
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 optional = false
 python-versions = "*"
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@@ -3225,7 +3101,6 @@ testing = ["pytest", "pytest-cov"]
 name = "opencv-python"
 version = "4.8.0.74"
 description = "Wrapper package for OpenCV python bindings."
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 optional = false
 python-versions = ">=3.6"
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@@ -3240,19 +3115,17 @@ files = [
 
 [package.dependencies]
 numpy = [
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-    {version = ">=1.21.2", markers = "python_version >= \"3.10\""},
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     {version = ">=1.21.4", markers = "python_version >= \"3.10\" and platform_system == \"Darwin\""},
+    {version = ">=1.21.2", markers = "platform_system != \"Darwin\" and python_version >= \"3.10\""},
 ]
 
 [[package]]
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 version = "0.11.1"
 description = "orix is an open-source Python library for handling crystal orientation mapping data."
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 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3282,7 +3155,6 @@ tests = ["coverage (>=5.0)", "numpydoc", "pytest (>=5.4)", "pytest-cov (>=2.8.1)
 name = "overrides"
 version = "7.4.0"
 description = "A decorator to automatically detect mismatch when overriding a method."
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 optional = true
 python-versions = ">=3.6"
 files = [
@@ -3294,7 +3166,6 @@ files = [
 name = "packaging"
 version = "23.2"
 description = "Core utilities for Python packages"
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 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3306,7 +3177,6 @@ files = [
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 version = "1.5.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
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 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3354,7 +3224,6 @@ test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"]
 name = "pandocfilters"
 version = "1.5.0"
 description = "Utilities for writing pandoc filters in python"
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 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -3366,7 +3235,6 @@ files = [
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 version = "0.8.3"
 description = "A Python Parser"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -3382,7 +3250,6 @@ testing = ["docopt", "pytest (<6.0.0)"]
 name = "partd"
 version = "1.4.1"
 description = "Appendable key-value storage"
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 optional = false
 python-versions = ">=3.7"
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@@ -3401,7 +3268,6 @@ complete = ["blosc", "numpy (>=1.9.0)", "pandas (>=0.19.0)", "pyzmq"]
 name = "pexpect"
 version = "4.8.0"
 description = "Pexpect allows easy control of interactive console applications."
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 optional = false
 python-versions = "*"
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@@ -3416,7 +3282,6 @@ ptyprocess = ">=0.5"
 name = "photutils"
 version = "1.8.0"
 description = "An Astropy package for source detection and photometry"
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 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3456,7 +3321,6 @@ test = ["pytest-astropy (>=0.10)"]
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 version = "0.7.5"
 description = "Tiny 'shelve'-like database with concurrency support"
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 optional = false
 python-versions = "*"
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@@ -3468,7 +3332,6 @@ files = [
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 description = "Python Imaging Library (Fork)"
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 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3536,7 +3399,6 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 name = "pint"
 version = "0.21.1"
 description = "Physical quantities module"
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 optional = false
 python-versions = ">=3.8"
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@@ -3558,7 +3420,6 @@ xarray = ["xarray"]
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 python-versions = ">=3.6"
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@@ -3570,7 +3431,6 @@ files = [
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 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3586,7 +3446,6 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-co
 name = "pluggy"
 version = "1.3.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
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 python-versions = ">=3.8"
 files = [
@@ -3602,7 +3461,6 @@ testing = ["pytest", "pytest-benchmark"]
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 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3624,7 +3482,6 @@ xxhash = ["xxhash (>=1.4.3)"]
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@@ -3636,7 +3493,6 @@ files = [
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 python-versions = ">=3.8"
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@@ -3654,7 +3510,6 @@ tests = ["pytest", "pytest-cov", "pytest-lazy-fixture"]
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 version = "0.17.1"
 description = "Python client for the Prometheus monitoring system."
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 python-versions = ">=3.6"
 files = [
@@ -3669,7 +3524,6 @@ twisted = ["twisted"]
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 version = "3.0.39"
 description = "Library for building powerful interactive command lines in Python"
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 optional = false
 python-versions = ">=3.7.0"
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@@ -3684,7 +3538,6 @@ wcwidth = "*"
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 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
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@@ -3711,7 +3564,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
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 version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
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 python-versions = "*"
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@@ -3723,7 +3575,6 @@ files = [
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 python-versions = "*"
 files = [
@@ -3738,7 +3589,6 @@ tests = ["pytest"]
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 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
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@@ -3750,7 +3600,6 @@ files = [
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 description = "Python library for Apache Arrow"
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 python-versions = ">=3.8"
 files = [
@@ -3792,7 +3641,6 @@ numpy = ">=1.16.6"
 name = "pycifrw"
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 description = "CIF/STAR file support for Python"
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 optional = false
 python-versions = "*"
 files = [
@@ -3806,7 +3654,6 @@ files = [
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 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -3818,7 +3665,6 @@ files = [
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 description = "Python bindings for ERFA"
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 python-versions = ">=3.7"
 files = [
@@ -3875,7 +3721,6 @@ test = ["pytest", "pytest-doctestplus (>=0.7)"]
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 description = "Python implementation of fast azimuthal integration"
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 python-versions = ">=3.7"
 files = [
@@ -3927,7 +3772,6 @@ opencl = ["pyopencl"]
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 version = "2.16.1"
 description = "Pygments is a syntax highlighting package written in Python."
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 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3942,7 +3786,6 @@ plugins = ["importlib-metadata"]
 name = "pynxtools"
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 description = "Extend NeXus for materials science experiment and serve as a NOMAD parser implementation for NeXus."
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 optional = false
 python-versions = "<3.11,>=3.8"
 files = [
@@ -3980,7 +3823,6 @@ dev = ["mypy", "pip-tools", "pycodestyle", "pylint", "pytest", "pytest-cov", "py
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 python-versions = ">=3.6.8"
 files = [
@@ -3995,7 +3837,6 @@ diagrams = ["jinja2", "railroad-diagrams"]
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 description = "pytest: simple powerful testing with Python"
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 python-versions = ">=3.7"
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@@ -4018,7 +3859,6 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no
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 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
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@@ -4034,7 +3874,6 @@ rich = ">=8.0.0"
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 version = "3.0.0"
 description = "Pytest plugin for measuring coverage."
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 optional = false
 python-versions = ">=3.6"
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@@ -4053,7 +3892,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale
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 description = "run tests in isolated forked subprocesses"
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 python-versions = ">=3.7"
 files = [
@@ -4069,7 +3907,6 @@ pytest = ">=3.10"
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 version = "2.5.0"
 description = "pytest xdist plugin for distributed testing and loop-on-failing modes"
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 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4091,7 +3928,6 @@ testing = ["filelock"]
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 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -4106,7 +3942,6 @@ six = ">=1.5"
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 version = "2.0.7"
 description = "A python library adding a json log formatter"
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 optional = true
 python-versions = ">=3.6"
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@@ -4118,7 +3953,6 @@ files = [
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 description = "World timezone definitions, modern and historical"
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 optional = false
 python-versions = "*"
 files = [
@@ -4130,7 +3964,6 @@ files = [
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 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -4146,7 +3979,6 @@ tzdata = {version = "*", markers = "python_version >= \"3.6\""}
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 description = "PyWavelets, wavelet transform module"
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 optional = false
 python-versions = ">=3.8"
 files = [
@@ -4184,7 +4016,6 @@ numpy = ">=1.17.3"
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 version = "306"
 description = "Python for Window Extensions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4208,7 +4039,6 @@ files = [
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-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -4223,7 +4053,6 @@ files = [
 name = "pyxem"
 version = "0.15.1"
 description = "multi-dimensional diffraction microscopy"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4258,7 +4087,6 @@ tests = ["coverage (>=5.0)", "coveralls (>=1.10)", "pytest (>=5.0)", "pytest-cov
 name = "pyyaml"
 version = "6.0.1"
 description = "YAML parser and emitter for Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4318,7 +4146,6 @@ files = [
 name = "pyzmq"
 version = "25.1.1"
 description = "Python bindings for 0MQ"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4424,7 +4251,6 @@ cffi = {version = "*", markers = "implementation_name == \"pypy\""}
 name = "qtconsole"
 version = "5.4.4"
 description = "Jupyter Qt console"
-category = "main"
 optional = true
 python-versions = ">= 3.7"
 files = [
@@ -4451,7 +4277,6 @@ test = ["flaky", "pytest", "pytest-qt"]
 name = "qtpy"
 version = "2.4.0"
 description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -4469,7 +4294,6 @@ test = ["pytest (>=6,!=7.0.0,!=7.0.1)", "pytest-cov (>=3.0.0)", "pytest-qt"]
 name = "radioactivedecay"
 version = "0.4.21"
 description = "A Python package for radioactive decay modelling that supports 1252 radionuclides, decay chains, branching, and metastable states."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4490,7 +4314,6 @@ sympy = "*"
 name = "recommonmark"
 version = "0.7.1"
 description = "A docutils-compatibility bridge to CommonMark, enabling you to write CommonMark inside of Docutils & Sphinx projects."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4507,7 +4330,6 @@ sphinx = ">=1.3.1"
 name = "referencing"
 version = "0.30.2"
 description = "JSON Referencing + Python"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -4523,7 +4345,6 @@ rpds-py = ">=0.7.0"
 name = "requests"
 version = "2.31.0"
 description = "Python HTTP for Humans."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4545,7 +4366,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "requests-cache"
 version = "1.1.0"
 description = "A persistent cache for python requests"
-category = "main"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -4576,7 +4396,6 @@ yaml = ["pyyaml (>=5.4)"]
 name = "rfc3339-validator"
 version = "0.1.4"
 description = "A pure python RFC3339 validator"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -4591,7 +4410,6 @@ six = "*"
 name = "rfc3986-validator"
 version = "0.1.1"
 description = "Pure python rfc3986 validator"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -4603,7 +4421,6 @@ files = [
 name = "rich"
 version = "13.6.0"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
-category = "dev"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -4623,7 +4440,6 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"]
 name = "rpds-py"
 version = "0.10.4"
 description = "Python bindings to Rust's persistent data structures (rpds)"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -4732,7 +4548,6 @@ files = [
 name = "scikit-image"
 version = "0.21.0"
 description = "Image processing in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -4783,7 +4598,6 @@ test = ["asv", "matplotlib (>=3.5)", "pooch (>=1.6.0)", "pytest (>=7.0)", "pytes
 name = "scikit-learn"
 version = "1.3.1"
 description = "A set of python modules for machine learning and data mining"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -4831,7 +4645,6 @@ tests = ["black (>=23.3.0)", "matplotlib (>=3.1.3)", "mypy (>=1.3)", "numpydoc (
 name = "scipy"
 version = "1.10.1"
 description = "Fundamental algorithms for scientific computing in Python"
-category = "main"
 optional = false
 python-versions = "<3.12,>=3.8"
 files = [
@@ -4870,7 +4683,6 @@ test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeo
 name = "send2trash"
 version = "1.8.2"
 description = "Send file to trash natively under Mac OS X, Windows and Linux"
-category = "main"
 optional = true
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -4887,7 +4699,6 @@ win32 = ["pywin32"]
 name = "setuptools"
 version = "68.2.2"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -4904,7 +4715,6 @@ testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jar
 name = "setuptools-scm"
 version = "8.0.4"
 description = "the blessed package to manage your versions by scm tags"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -4927,7 +4737,6 @@ test = ["build", "pytest", "rich", "wheel"]
 name = "silx"
 version = "1.1.2"
 description = "Software library for X-ray data analysis"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -4974,7 +4783,6 @@ test = ["pytest", "pytest-mock", "pytest-xvfb"]
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -4986,7 +4794,6 @@ files = [
 name = "smmap"
 version = "5.0.1"
 description = "A pure Python implementation of a sliding window memory map manager"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4998,7 +4805,6 @@ files = [
 name = "sniffio"
 version = "1.3.0"
 description = "Sniff out which async library your code is running under"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -5010,7 +4816,6 @@ files = [
 name = "snowballstemmer"
 version = "2.2.0"
 description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5022,7 +4827,6 @@ files = [
 name = "soupsieve"
 version = "2.5"
 description = "A modern CSS selector implementation for Beautiful Soup."
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -5034,7 +4838,6 @@ files = [
 name = "sparse"
 version = "0.14.0"
 description = "Sparse n-dimensional arrays"
-category = "main"
 optional = false
 python-versions = ">=3.8, <4"
 files = [
@@ -5057,7 +4860,6 @@ tox = ["dask[array]", "pytest (>=3.5)", "pytest-black", "pytest-cov", "tox"]
 name = "sphinx"
 version = "7.1.2"
 description = "Python documentation generator"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5094,7 +4896,6 @@ test = ["cython", "filelock", "html5lib", "pytest (>=4.6)"]
 name = "sphinx-autodoc-typehints"
 version = "1.24.0"
 description = "Type hints (PEP 484) support for the Sphinx autodoc extension"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -5115,7 +4916,6 @@ testing = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "diff-cover (>=7.5)", "p
 name = "sphinx-basic-ng"
 version = "1.0.0b2"
 description = "A modern skeleton for Sphinx themes."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -5133,7 +4933,6 @@ docs = ["furo", "ipython", "myst-parser", "sphinx-copybutton", "sphinx-inline-ta
 name = "sphinx-rtd-theme"
 version = "1.3.0"
 description = "Read the Docs theme for Sphinx"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -5153,7 +4952,6 @@ dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
 name = "sphinxcontrib-applehelp"
 version = "1.0.4"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5169,7 +4967,6 @@ test = ["pytest"]
 name = "sphinxcontrib-devhelp"
 version = "1.0.2"
 description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -5185,7 +4982,6 @@ test = ["pytest"]
 name = "sphinxcontrib-htmlhelp"
 version = "2.0.1"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5201,7 +4997,6 @@ test = ["html5lib", "pytest"]
 name = "sphinxcontrib-jquery"
 version = "4.1"
 description = "Extension to include jQuery on newer Sphinx releases"
-category = "main"
 optional = false
 python-versions = ">=2.7"
 files = [
@@ -5216,7 +5011,6 @@ Sphinx = ">=1.8"
 name = "sphinxcontrib-jsmath"
 version = "1.0.1"
 description = "A sphinx extension which renders display math in HTML via JavaScript"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -5231,7 +5025,6 @@ test = ["flake8", "mypy", "pytest"]
 name = "sphinxcontrib-qthelp"
 version = "1.0.3"
 description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -5247,7 +5040,6 @@ test = ["pytest"]
 name = "sphinxcontrib-serializinghtml"
 version = "1.1.5"
 description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -5263,7 +5055,6 @@ test = ["pytest"]
 name = "sphinxcontrib-websupport"
 version = "1.2.4"
 description = "Sphinx API for Web Apps"
-category = "main"
 optional = true
 python-versions = ">=3.5"
 files = [
@@ -5282,7 +5073,6 @@ test = ["Sphinx", "pytest", "sqlalchemy", "whoosh"]
 name = "stack-data"
 version = "0.6.3"
 description = "Extract data from python stack frames and tracebacks for informative displays"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5302,7 +5092,6 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
 name = "symmetrize"
 version = "0.5.5"
 description = "Symmetrization and centering of 2D pattern using nonrigid point set registration"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5326,7 +5115,6 @@ sphinx-rtd-theme = "*"
 name = "sympy"
 version = "1.12"
 description = "Computer algebra system (CAS) in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5341,7 +5129,6 @@ mpmath = ">=0.19"
 name = "terminado"
 version = "0.17.1"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -5362,7 +5149,6 @@ test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
 name = "threadpoolctl"
 version = "3.2.0"
 description = "threadpoolctl"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5374,7 +5160,6 @@ files = [
 name = "tifffile"
 version = "2022.10.10"
 description = "Read and write TIFF files"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5392,7 +5177,6 @@ all = ["fsspec", "imagecodecs (>=2022.2.22)", "lxml", "matplotlib (>=3.3)", "zar
 name = "tinycss2"
 version = "1.2.1"
 description = "A tiny CSS parser"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -5411,7 +5195,6 @@ test = ["flake8", "isort", "pytest"]
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5423,7 +5206,6 @@ files = [
 name = "tomlkit"
 version = "0.12.1"
 description = "Style preserving TOML library"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -5435,7 +5217,6 @@ files = [
 name = "toolz"
 version = "0.12.0"
 description = "List processing tools and functional utilities"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -5447,7 +5228,6 @@ files = [
 name = "tornado"
 version = "6.3.3"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
-category = "main"
 optional = false
 python-versions = ">= 3.8"
 files = [
@@ -5468,7 +5248,6 @@ files = [
 name = "tqdm"
 version = "4.66.1"
 description = "Fast, Extensible Progress Meter"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5489,7 +5268,6 @@ telegram = ["requests"]
 name = "traitlets"
 version = "5.11.2"
 description = "Traitlets Python configuration system"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5505,7 +5283,6 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.5.1)", "pre-commit", "pytest (>=7.0,
 name = "traits"
 version = "6.4.2"
 description = "Observable typed attributes for Python classes"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5570,10 +5347,10 @@ test = ["Cython", "PySide6", "Sphinx", "flake8", "flake8-ets", "mypy", "numpy",
 name = "transforms3d"
 version = "0.4.1"
 description = "Functions for 3D coordinate transformations"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
+    {file = "transforms3d-0.4.1-py3-none-any.whl", hash = "sha256:aea08776c1c915c8b424418994202aced8e46301c375ce63423d14f1d0045aa7"},
     {file = "transforms3d-0.4.1.tar.gz", hash = "sha256:31c755266a0b0a222488b8d039f6f325cf486c52728c03e307ce047b2fad1179"},
 ]
 
@@ -5581,7 +5358,6 @@ files = [
 name = "types-python-dateutil"
 version = "2.8.19.14"
 description = "Typing stubs for python-dateutil"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -5593,7 +5369,6 @@ files = [
 name = "typing-extensions"
 version = "4.8.0"
 description = "Backported and Experimental Type Hints for Python 3.8+"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5605,7 +5380,6 @@ files = [
 name = "tzdata"
 version = "2023.3"
 description = "Provider of IANA time zone data"
-category = "main"
 optional = false
 python-versions = ">=2"
 files = [
@@ -5617,7 +5391,6 @@ files = [
 name = "tzlocal"
 version = "4.3"
 description = "tzinfo object for the local timezone"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5637,7 +5410,6 @@ devenv = ["black", "check-manifest", "flake8", "pyroma", "pytest (>=4.3)", "pyte
 name = "uncertainties"
 version = "3.1.7"
 description = "Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5658,7 +5430,6 @@ tests = ["nose", "numpy"]
 name = "uri-template"
 version = "1.3.0"
 description = "RFC 6570 URI Template Processor"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -5673,7 +5444,6 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake
 name = "url-normalize"
 version = "1.4.3"
 description = "URL normalization for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -5686,14 +5456,13 @@ six = "*"
 
 [[package]]
 name = "urllib3"
-version = "2.0.6"
+version = "2.0.7"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "urllib3-2.0.6-py3-none-any.whl", hash = "sha256:7a7c7003b000adf9e7ca2a377c9688bbc54ed41b985789ed576570342a375cd2"},
-    {file = "urllib3-2.0.6.tar.gz", hash = "sha256:b19e1a85d206b56d7df1d5e683df4a7725252a964e3993648dd0fb5a1c157564"},
+    {file = "urllib3-2.0.7-py3-none-any.whl", hash = "sha256:fdb6d215c776278489906c2f8916e6e7d4f5a9b602ccbcfdf7f016fc8da0596e"},
+    {file = "urllib3-2.0.7.tar.gz", hash = "sha256:c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84"},
 ]
 
 [package.extras]
@@ -5706,7 +5475,6 @@ zstd = ["zstandard (>=0.18.0)"]
 name = "wcwidth"
 version = "0.2.8"
 description = "Measures the displayed width of unicode strings in a terminal"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5718,7 +5486,6 @@ files = [
 name = "webcolors"
 version = "1.13"
 description = "A library for working with the color formats defined by HTML and CSS."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -5734,7 +5501,6 @@ tests = ["pytest", "pytest-cov"]
 name = "webencodings"
 version = "0.5.1"
 description = "Character encoding aliases for legacy web content"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -5746,7 +5512,6 @@ files = [
 name = "websocket-client"
 version = "1.6.3"
 description = "WebSocket client for Python with low level API options"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -5763,7 +5528,6 @@ test = ["websockets"]
 name = "widgetsnbextension"
 version = "4.0.9"
 description = "Jupyter interactive widgets for Jupyter Notebook"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5775,7 +5539,6 @@ files = [
 name = "xarray"
 version = "0.20.2"
 description = "N-D labeled arrays and datasets in Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5799,7 +5562,6 @@ viz = ["matplotlib", "nc-time-axis", "seaborn"]
 name = "zarr"
 version = "2.16.1"
 description = "An implementation of chunked, compressed, N-dimensional arrays for Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5821,7 +5583,6 @@ jupyter = ["ipytree (>=0.2.2)", "ipywidgets (>=8.0.0)", "notebook"]
 name = "zipfile37"
 version = "0.1.3"
 description = "Read and write ZIP files - backport of the zipfile module from Python 3.7"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5832,7 +5593,6 @@ files = [
 name = "zipp"
 version = "3.17.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5845,10 +5605,10 @@ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.link
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [extras]
-docs = ["sphinx", "sphinx-rtd-theme", "tomlkit", "sphinx-autodoc-typehints"]
-notebook = ["jupyter", "ipykernel"]
+docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-rtd-theme", "tomlkit"]
+notebook = ["ipykernel", "jupyter"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8,<3.11"
-content-hash = "0886d7c6beeb6d8052154aa45cff0bac51bf4dd7f182e70603758a256f5f819e"
+content-hash = "0b7d42c3cd21ecb610f3dcc6b879656334652da52e13f4b464052c94d50b9d79"
diff --git a/pyproject.toml b/pyproject.toml
index 78581d11..e94540ab 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,7 +17,7 @@ lmfit = "^1.0.3"
 matplotlib = "^3.5.1"
 natsort = "^8.1.0"
 numba = "^0.55.1"
-numpy = ">=1.18,<1.22"
+numpy = ">=1.18,<1.23"
 opencv-python = "<=4.8.0.74"
 pandas = "^1.4.1"
 psutil = "^5.9.0"
diff --git a/sed/calibrator/energy.py b/sed/calibrator/energy.py
index a0058a6a..ab5fe36d 100644
--- a/sed/calibrator/energy.py
+++ b/sed/calibrator/energy.py
@@ -1826,7 +1826,7 @@ def peakdetect1d(
     if lookahead < 1:
         raise ValueError("Lookahead must be '1' or above in value")
 
-    if not (np.isscalar(delta) and delta >= 0):
+    if not (np.ndim(delta) == 0 and delta >= 0):
         raise ValueError("delta must be a positive number")
 
     # maxima and minima candidates are temporarily stored in
diff --git a/sed/config/default.yaml b/sed/config/default.yaml
index 85066a04..363d505a 100644
--- a/sed/config/default.yaml
+++ b/sed/config/default.yaml
@@ -31,6 +31,10 @@ dataframe:
   tof_binning: 1
   # binning factor used for the adc coordinate (2^(adc_binning-1))
   adc_binning: 1
+  # list of columns to apply jitter to.
+  jitter_cols: ["@x_column", "@y_column", "@tof_column"]
+  # Jitter amplitude or list of jitter amplitudes. Should equal half the digitial step size of each jitter_column
+  jitter_amps: 0.5
 
 energy:
   # Number of bins to use for energy calibration traces
diff --git a/sed/core/dfops.py b/sed/core/dfops.py
index a09a5f9c..e4d43252 100644
--- a/sed/core/dfops.py
+++ b/sed/core/dfops.py
@@ -30,6 +30,8 @@ def apply_jitter(
             with added jitter. Defaults to None.
         amps (Union[float, Sequence[float]], optional): Amplitude scalings for the
             jittering noise. If one number is given, the same is used for all axes.
+            For normal noise, the added noise will have sdev [-amp, +amp], for
+            uniform noise it will cover the interval [-amp, +amp].
             Defaults to 0.5.
         jitter_type (str, optional): the type of jitter to add. 'uniform' or 'normal'
             distributed noise. Defaults to "uniform".
diff --git a/sed/core/processor.py b/sed/core/processor.py
index 22114e44..51d7b638 100644
--- a/sed/core/processor.py
+++ b/sed/core/processor.py
@@ -1267,23 +1267,38 @@ def calibrate_delay_axis(
             else:
                 print(self._dataframe)
 
-    def add_jitter(self, cols: Sequence[str] = None):
+    def add_jitter(
+        self,
+        cols: List[str] = None,
+        amps: Union[float, Sequence[float]] = None,
+        **kwds,
+    ):
         """Add jitter to the selected dataframe columns.
 
         Args:
-            cols (Sequence[str], optional): The colums onto which to apply jitter.
+            cols (List[str], optional): The colums onto which to apply jitter.
                 Defaults to config["dataframe"]["jitter_cols"].
+            amps (Union[float, Sequence[float]], optional): Amplitude scalings for the
+                jittering noise. If one number is given, the same is used for all axes.
+                For uniform noise (default) it will cover the interval [-amp, +amp].
+                Defaults to config["dataframe"]["jitter_amps"].
+            **kwds: additional keyword arguments passed to apply_jitter
         """
         if cols is None:
-            cols = self._config["dataframe"].get(
-                "jitter_cols",
-                self._dataframe.columns,
-            )  # jitter all columns
+            cols = self._config["dataframe"]["jitter_cols"]
+        for loc, col in enumerate(cols):
+            if col.startswith("@"):
+                cols[loc] = self._config["dataframe"].get(col.strip("@"))
+
+        if amps is None:
+            amps = self._config["dataframe"]["jitter_amps"]
 
         self._dataframe = self._dataframe.map_partitions(
             apply_jitter,
             cols=cols,
             cols_jittered=cols,
+            amps=amps,
+            **kwds,
         )
         metadata = []
         for col in cols:
diff --git a/sed/diagnostics.py b/sed/diagnostics.py
index 912de307..22e7dd6d 100644
--- a/sed/diagnostics.py
+++ b/sed/diagnostics.py
@@ -1,7 +1,6 @@
 """This module contains diagnostic output functions for the sed module
 
 """
-from typing import List
 from typing import Sequence
 from typing import Tuple
 
@@ -13,16 +12,16 @@
 
 
 def plot_single_hist(
-    histvals: List[int],
-    edges: List[float],
+    histvals: np.ndarray,
+    edges: np.ndarray,
     legend: str = None,
     **kwds,
 ) -> pbk.Figure:
     """Bokeh-based plotting of a single histogram with legend and tooltips.
 
     Args:
-        histvals (List[int]): Histogram counts (e.g. vertical axis).
-        edges (List[float]): Histogram edge values (e.g. horizontal axis).
+        histvals (np.ndarray): Histogram counts (e.g. vertical axis).
+        edges (np.ndarray): Histogram edge values (e.g. horizontal axis).
         legend (str, optional): Text for the plot legend. Defaults to None.
         **kwds: Keyword arguments for ``bokeh.plotting.figure().quad()``.
 
diff --git a/tests/test_binning.py b/tests/test_binning.py
index 871be1bc..74062cb5 100644
--- a/tests/test_binning.py
+++ b/tests/test_binning.py
@@ -393,8 +393,8 @@ def test_simplify_binning_arguments(
         ranges_,
     )
 
-    for i, bin_ in enumerate(bins__):
-        np.testing.assert_array_equal(bin_, bins_expected[i])
+    for i, _ in enumerate(bins__):
+        np.testing.assert_array_equal(bins__[i], bins_expected[i])
         np.testing.assert_array_equal(axes__[i], axes_expected[i])
         if ranges__ is not None:
             np.testing.assert_array_equal(ranges__[i], ranges_expected[i])
diff --git a/tests/test_processor.py b/tests/test_processor.py
index fba83d77..270d1614 100644
--- a/tests/test_processor.py
+++ b/tests/test_processor.py
@@ -581,11 +581,15 @@ def test_add_jitter():
         system_config={},
     )
     res1 = processor.dataframe["X"].compute()
+    res1a = processor.dataframe["ADC"].compute()
     processor.add_jitter()
     res2 = processor.dataframe["X"].compute()
+    res2a = processor.dataframe["ADC"].compute()
     np.testing.assert_allclose(res1, np.round(res1))
     np.testing.assert_allclose(res1, np.round(res2))
     assert (res1 != res2).all()
+    # test that jittering is not applied on ADC column
+    np.testing.assert_allclose(res1a, res2a)
 
 
 def test_event_histogram():